Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1865 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACTCAGAATGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGATGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACATTCAACTTCGAGATATTGAAGGCCGGAAGCGCGAACGACGTTGTCACGAAGGAGTTTTTCCCGATAGGTGGAACGGTGAATGCTGACTTTGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCTTCTTCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGCAGGGGAGGGGAGAATGGTTCAGCAAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGAAGGGGACCAAGGTCTCGGAGTTCGCAGTACAGAGGCGTCACATTCTATCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGAAAGCAGGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTTAGAGGGGTCGATGCTGACATTAATTTCAATCTCAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGAGTGACTCTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGAGAATTTCTGAGGGCAGCAGTGAAGGTGGCCGGAACATGCTTGACTTGAATCTAGGAATTTCACCCCCCTCTCTTGACAACTGTCCAAAGGATAATGAGGGGCATCTGCGATTCCAATCCGGTCCATGTTATGCTAATGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTGAAAGGACTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTTTACAATCTAGGTTCTTTCCCAGTGAGGAAAGCGTAACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAATCCCCAACTGGGCATGGCAAATTCATGGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACCGCGCCAACCGGGCTCGATCGCCCACAATCTCCATTTCACTTCTGCCAAAGCTTCCCTCAACTCCCCTCAGTACCACCACCAGTTGAACCCACAACAGGCACCACCATAA 1440 49.93 MFDLNLNVDSPDATQNEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSANDVVTKEFFPIGGTVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSAGEGRMVQQVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYEGERISEGSSEGGRNMLDLNLGISPPSLDNCPKDNEGHLRFQSGPCYANDRSTMMESNADAAVGDPPLKGLVMTSEHAPLWNGLQSRFFPSEESVTEKRLALGSSQGIPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIHPPRQPGSIAHNLHFTSAKASLNSPQYHHQLNPQQAPP 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44963989 44968318 - Maker00001452 Lcy8g1865 640757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1865 479 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 SMART rav1_2 249 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Lcy8g1865 479 CDD AP2 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 MobiDBLite consensus disorder prediction 30 58 - -
Lcy8g1865 479 CDD AP2 248 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 Gene3D AP2/ERF domain 248 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 MobiDBLite consensus disorder prediction 28 58 - -
Lcy8g1865 479 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 319 - -
Lcy8g1865 479 SUPERFAMILY DNA-binding domain 248 292 IPR016177 GO:0003677(InterPro)
Lcy8g1865 479 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Lcy8g1865 479 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1865 479 MobiDBLite consensus disorder prediction 130 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0808 Lcy-Chr7:7870537 Lcy8g1865 Lcy-Chr8:44963989 2.05E-89 dispersed
Lcy8g0777 Lcy-Chr8:28496511 Lcy8g1865 Lcy-Chr8:44963989 2.76E-98 dispersed
Lcy8g1865 Lcy-Chr8:44963989 Lcy9g2006 Lcy-Chr9:44947296 3.36E-38 dispersed
Lcy1g1393 Lcy-Chr1:13480982 Lcy8g1865 Lcy-Chr8:44963989 2.82E-107 wgd
Lcy5g0256 Lcy-Chr5:2409648 Lcy8g1865 Lcy-Chr8:44963989 7.92E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20574 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1865 K09284 - csv:101222024 848.58