Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1870 ATGGACGACTTCTTAGACAATATACCGCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTCCAGCTTATCATCCCCGTCGAGTCCGCTCATCGAGCCATTTCCTACCTTGGCGAGCTCGGCATCCTTCAATTTAGAGATGTTCCACGATCTCTGAGTTGCGCCACAAGTCACCAGTTGGATTTATGCGTTGACATTGCAGCATATAGATTGCGTAATCGGGAGTTAAACGTGGACAAAAGCCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTACGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGACCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGATTCGTCTAGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCAACAGTCATATAATGAACTCTTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCGAGCCAATCTGGTTTAAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTACTTAGATTTGAAAGGATGTTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCGCCAGCAGACATACAGATCATGGATCCCATATCTACGGAAATGGTTGAGAAAACAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATGTAACCAAACAAAGGCAGATAACTAGAGAAGTTACATCTCGCCTCACTGAACTTGAAGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCGATAGGGTTTCACCTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACATTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAAACTCAGATTCAGGAGGCATTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGCATAATATTTCATGTGATGGATACGATTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTAACAAGTGCTTTTCAGGAAATTGTTGATGCCTATGGGTGA 1299 40.88 MDDFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDVPRSLSCATSHQLDLCVDIAAYRLRNRELNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLQQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSSQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADIQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDVTKQRQITREVTSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTIESPPTYFRTNRLTSAFQEIVDAYG 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45015690 45025614 - Maker00000227 Lcy8g1870 640762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1870 432 Coils Coil 121 155 - -
Lcy8g1870 432 PANTHER VACUOLAR PROTON ATPASES 11 432 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Lcy8g1870 432 Pfam V-type ATPase 116kDa subunit family 75 432 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1938 Lcy-Chr13:38412158 Lcy8g1870 Lcy-Chr8:45015690 7.36E-76 dispersed
Lcy8g1870 Lcy-Chr8:45015690 Lcy3g0992 Lcy-Chr3:33750832 2.40E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1870 K02154 - csv:101216514 768.459