Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1878 ATGGAAGGCAGTGACACAATCACCACCGTTTCATCAACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCTCCCGCTCCGCCGCCGCCCGTCGTTCTCAGTCCTTGTGCGGCCTGCAAGATATTGAGGCGGCGATGCGCCGAACGATGTGTATTGGCGCCCTATTTCCCGCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCTAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATACCAAAGGGCCGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGGATCAGAGACCCTGTTTATGGGTCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCCCAGGCCGAGCTTGTCAACATGCAATGCCAACAAGCCAATCTGGTGGCTTTCGTTTGCAGGGAATTGGCTCAGTCTCATCAGTCTTTTGATGATTTCAATGCCAGCCCTCAAAGTGGCTTCCAAAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACCCATTGTGGGAGCCTCTCTGGACATGA 585 51.97 MEGSDTITTVSSTPLSQSPSSSSSPPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPEYQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAELVNMQCQQANLVAFVCRELAQSHQSFDDFNASPQSGFQSISPSYFDDSNVNPLWEPLWT 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45098791 45100984 + Maker00001235 Lcy8g1878 640770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1878 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 159 - -
Lcy8g1878 194 MobiDBLite consensus disorder prediction 1 31 - -
Lcy8g1878 194 Coils Coil 115 142 - -
Lcy8g1878 194 MobiDBLite consensus disorder prediction 1 20 - -
Lcy8g1878 194 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Lcy8g1878 194 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0363 Lcy-Chr11:6064387 Lcy8g1878 Lcy-Chr8:45098791 1.94E-60 dispersed
Lcy11g0364 Lcy-Chr11:6118504 Lcy8g1878 Lcy-Chr8:45098791 2.94E-70 dispersed
Lcy7g0815 Lcy-Chr7:7965904 Lcy8g1878 Lcy-Chr8:45098791 1.61E-63 dispersed
Lcy10g1785 Lcy-Chr10:42215302 Lcy8g1878 Lcy-Chr8:45098791 1.18E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20576 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1878 - - - 0.0