Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1889 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGCAAGAATGCATATTGCAATGGAAATTGTGAAGAGGGTCGCTGCAATTGTTGTTTATCCTCTTCAACCTCTTCTTGTTCCTCAAATTCATCGCCAACTCCCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTCCAGCCGCAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTATTAGGCAGTGCTCTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATGGAGCTGATGGGGATGGGAGCGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCCTCTGACACCAGCACCCATGGAGGATTCTCTGTTCCCCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTAGAGGGTGAAAATGGAGAGCTAAGGTTGGGAATCAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTTGGCAACCAAAATTCTTGTGCAAACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCATGTTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGCCAGAAGTATGTGAAGAGCATCAATAATCCAGTAACTGTAGGCACAAGATTCAAAATGAGATTCGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTCATCGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTGACGGTCCGATGGGATAAAGACAGCGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTATCCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGAGGTGCGATCTTCTGCACAACAAAATCAAGCGTCGGGTGGAGTTGAAAAGATTAATATAGGTGATTATGTAAAGGTTCATCCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACAAGAAAACCAGAATATGGTTTAGGTGTTTGGGGAAAGTTCAATCTTAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAGCTTTTATCACATGGCGTCAAATGGTGCCCAAAATATGTATTTCCCTCGTGGTGAAATATACAGTATGGGCCAAGCCGCTATGATTCGCTCAAATGATAGCAACTTTCCAAGAGAAAATACCTTGTTCAACCCATCTGCTGTTGATGCGAGTGTTATCAGGACCAAAATGGAAAGGGCTAATCGTTCACTTGATCGGGAGTCTCTACATCTAGTTTCTGCTCCTCCAACTTCAGGGTTGAATATGAGGAATTCAAAGGAGGAAAATGTGAATGAGAATCCAACTGGCTGTAAACTTTTTGGCTTTTCCTTGACTACGGAAACTGCTACAAACTTGCAAAGTTCAGGGAAGAGAAGTTGCACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATCGATCTCTCAAGACTGAATGGCTATACTGATCTGCTTTCTGAACTGGAGCGGCTGTTTAGCATGGAAGGACTCTTAAAAGATCCTGATAAAGGATGGCGAGTACTGTACACCGACAATGAGAACGACGTAATGGTTGTTGGGGATTATCCATGGCATGACTTCTGTGATGCCGTTTCGAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACCAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCACCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTTCTCCAACAGTAGTAAGAGAGTTTAATTAG 2298 44.91 MEIDLNQTASEVGKNAYCNGNCEEGRCNCCLSSSTSSCSSNSSPTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELLGSALEGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLARVVKAISTKSMFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVIGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSIQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENVGIVSPFYGCDTAKRSLEFEVRSSAQQNQASGGVEKINIGDYVKVHPNSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYGLGVWGKFNLSDNSFNTFQSPNSSFYHMASNGAQNMYFPRGEIYSMGQAAMIRSNDSNFPRENTLFNPSAVDASVIRTKMERANRSLDRESLHLVSAPPTSGLNMRNSKEENVNENPTGCKLFGFSLTTETATNLQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVVREFN 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45166309 45173786 - Maker00001191 Lcy8g1889 640781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1889 765 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 219 725 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy8g1889 765 MobiDBLite consensus disorder prediction 590 609 - -
Lcy8g1889 765 Pfam Auxin response factor 257 337 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy8g1889 765 Gene3D - 294 363 - -
Lcy8g1889 765 MobiDBLite consensus disorder prediction 746 765 - -
Lcy8g1889 765 FunFam Auxin response factor 630 724 - -
Lcy8g1889 765 SUPERFAMILY DNA-binding pseudobarrel domain 163 219 IPR015300 -
Lcy8g1889 765 MobiDBLite consensus disorder prediction 591 609 - -
Lcy8g1889 765 Gene3D - 631 724 - -
Lcy8g1889 765 ProSiteProfiles PB1 domain profile. 635 719 IPR053793 -
Lcy8g1889 765 Pfam AUX/IAA family 682 720 IPR033389 -
Lcy8g1889 765 FunFam Auxin response factor 293 363 - -
Lcy8g1889 765 SUPERFAMILY CAD & PB1 domains 637 714 - -
Lcy8g1889 765 Gene3D - 167 221 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0307 Lcy-Chr1:2729074 Lcy8g1889 Lcy-Chr8:45166309 1.33E-111 dispersed
Lcy7g1941 Lcy-Chr7:45650767 Lcy8g1889 Lcy-Chr8:45166309 1.30E-95 dispersed
Lcy8g1889 Lcy-Chr8:45166309 Lcy9g2249 Lcy-Chr9:47000188 1.90E-71 dispersed
Lcy8g1889 Lcy-Chr8:45166309 Lcy4g0845 Lcy-Chr4:11328680 1.31E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1889 K14486 - csv:101212503 1372.07