Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1893 ATGACCGTAATCGACATCATCTTCCGAGTCGATTCTATCTGCAAGAAATACGAGAAGTATGATGTCGAGAAACAGCGCGAGCTCAATGCTTATGGCGACGATGTCTTTGCTCGCCTCTTCGCCGCCGTTGAGGCCGAAATCGACGCCGCTCTCCAGAAATCGGAGGCTGCCTCGACCGAGAAGAATAGGGCTGCTGCAGTTGCCATGAACGCCGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTGCCTAAGCTTCGTAAATTGGCTCACAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTTGCGGTCAGAGATGATCTTGTTCTTGGGCTAGAGGAGAGGATCAAAGCGATTCCAGATGGGAGTACCTCCGCAGGCAAACAATCTGGAGGATGGGCCTCCTCCTCCTCATCGAACAACATCAAATTTGATTCAACATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAAAGTGAAGAATCAAGTCAATTTCGACAGGAGTATGAAATGCGGAAGATGAAACAGGCATACCAAACACGTGAACGGTTAAAGATCAATCAAATAACATTATATGGGCTCAATCAAGACCAAGGGCTCGATATCATATCTGAAGGGTTGGATATGCTGAAAAATCTGGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATTGACGAGATCGACGCAAAGGTTGACAAGGTGACTAATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACACTCTATGAGGTGAGATCCAGTCAAAACTTCTGCATCGATATCATTCTTCTCTGTGTAATTCTTGGAATCGCTTCATACCTATACAAGTAA 852 45.54 MTVIDIIFRVDSICKKYEKYDVEKQRELNAYGDDVFARLFAAVEAEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELAVRDDLVLGLEERIKAIPDGSTSAGKQSGGWASSSSSNNIKFDSTSDGNFESEYFQQSEESSQFRQEYEMRKMKQAYQTRERLKINQITLYGLNQDQGLDIISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTNEIKNTNVRLKETLYEVRSSQNFCIDIILLCVILGIASYLYK 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45213700 45215572 + Maker00000975 Lcy8g1893 640785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1893 283 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 192 254 IPR000727 -
Lcy8g1893 283 SUPERFAMILY SNARE fusion complex 197 252 - -
Lcy8g1893 283 PANTHER SYNTAXIN 27 272 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy8g1893 283 FunFam Syntaxin 6 199 262 - -
Lcy8g1893 283 Pfam SNARE domain 229 278 IPR000727 -
Lcy8g1893 283 CDD SNARE_Qc 198 253 - -
Lcy8g1893 283 MobiDBLite consensus disorder prediction 124 146 - -
Lcy8g1893 283 Coils Coil 230 250 - -
Lcy8g1893 283 Gene3D - 196 253 - -
Lcy8g1893 283 SMART tSNARE_6 187 254 IPR000727 -
Lcy8g1893 283 ProSitePatterns Syntaxin / epimorphin family signature. 198 237 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy8g1893 283 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2792 Lcy-Chr1:55746756 Lcy8g1893 Lcy-Chr8:45213700 1.21E-156 dispersed
Lcy1g2796 Lcy-Chr1:55792880 Lcy8g1893 Lcy-Chr8:45213700 1.47E-157 dispersed
Lcy5g0279 Lcy-Chr5:2615499 Lcy8g1893 Lcy-Chr8:45213700 3.24E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1893 K08506 - csv:101211289 422.165