Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1900 ATGGGCAAGGACGTCGAGGTTGCCGAAGGCGAATTCCAAGCCAAGGACTACCAAGACCCTCCCCCCGCCCCGCTCATCGACCCCGAAGAGCTCACCAAATGGTCCCTCTACCGTGCCGCCATCGCCGAATTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTGACCGTCATCGGCTACTCCCACCAGAGTGACCCAACCATATCCACCGACCCGTGTAGCGGTGTTGGCATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGTATCTCCGGTGGACACATCAACCCGGCCGTGACGTTCGGATTGTTTTTGGCAAGGAAGGTGTCATTGGTTAGGGCGTTGTTGTACATAATTGCTCAGTGTGCTGGTGCCATCTGTGGGTGTGGATTGGTTAAGGCTTTCCAATCGGCGTTCTACGTGAGGTATAAGGGTGGGGCCAACATGCTCGCTGATGGATACAACAAAGGCACTGGATTGGGAGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACAGTCTTCTCTGCCACTGATCCCAAGAGAAGCGCCAGAGATTCCCATGTTCCTGTTTTGGCACCACTGCCCATTGGATTTGCAGTGTTCATGGTTCACTTGGCTACAATTCCCATCACTGGAACTGGAATTAACCCTGCAAGAAGTTTCGGAGCTGCTGTAATTTACAACCACGAAAAGGCCTGGGATGACCAATGGATTTTCTGGGTTGGGCCATTCATTGGAGCTGCAATTGCTGCAATTTACCACCAGTATGTGCTCAGAGCTGGAGCCATTAAGGCTCTTGGATCCTTCAGGAGCAACGCTTGA 855 53.33 MGKDVEVAEGEFQAKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPTISTDPCSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAFYVRYKGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNHEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45259851 45261964 - Maker00001425 Lcy8g1900 640792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1900 284 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Lcy8g1900 284 CDD MIP 38 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 Pfam Major intrinsic protein 30 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 NCBIfam MIP family channel protein 42 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 SUPERFAMILY Aquaporin-like 29 270 IPR023271 -
Lcy8g1900 284 FunFam Probable aquaporin PIP1-2 23 284 - -
Lcy8g1900 284 Gene3D Glycerol uptake facilitator protein. 23 284 IPR023271 -
Lcy8g1900 284 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1900 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 282 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0895 Lcy-Chr3:31885171 Lcy8g1900 Lcy-Chr8:45259851 2.11E-151 dispersed
Lcy7g0971 Lcy-Chr7:9971044 Lcy8g1900 Lcy-Chr8:45259851 1.82E-127 dispersed
Lcy7g0972 Lcy-Chr7:9978708 Lcy8g1900 Lcy-Chr8:45259851 3.33E-123 dispersed
Lcy8g1261 Lcy-Chr8:39184051 Lcy8g1900 Lcy-Chr8:45259851 3.60E-134 dispersed
Lcy1g1664 Lcy-Chr1:17178138 Lcy8g1900 Lcy-Chr8:45259851 1.20E-12 transposed
Lcy1g1371 Lcy-Chr1:13291759 Lcy8g1900 Lcy-Chr8:45259851 6.38E-155 wgd
Lcy10g1764 Lcy-Chr10:42030570 Lcy8g1900 Lcy-Chr8:45259851 3.70E-160 wgd
Lcy7g0654 Lcy-Chr7:6003407 Lcy8g1900 Lcy-Chr8:45259851 1.75E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1900 K09872 - csv:101215300 533.102