Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1904 ATGGCCATGGCTATTGCTCATCACAGGGAGAGTAGTAGTGGGAGCATAACCAGGCATCTTGATAGTACTGGAAAGTATGTTCGATACACAGCAGAGCAGGTCGAGGCTCTTGAGCGAGTCTATGCCGAGTGCCCGAAGCCAAGTTCTCTTCGGAGGCAGCAGCTCATCCGGGAATGCCCAATTCTTTCCAATATAGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAATAAATTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAATTGGTGTGTGAGAATGGATTTATGCGGCAGCAATTGCAAACAGTGCCAGCGGCAACTACTGATGCTAGCTGTGATTCTGTGGTCACCACTCCTCAGCCTTCTCGAAGAGATGCTAATAACCCAGCTGGACTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACTCTAAGATACACGATAACTTTGGAAAACGGCAGCCTTGTGGTTTGTGAGAGATCTCTCTCTGGATCTGGTGCTGGTCCAAGTGCAGCTGCGGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGTTACCTGATTCGACCATGTGAGGGTGGTGGGTCCATCATACATATAGTAGATCACCTAAATCTTGAGGCGTGGAATGTTCCTGAGGTGCTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCCCTGCGGTACGTTAGGCAAATAGCTCAAGAGACGAGTGGTGAAGTGGTTTATGGTTTGGGCCGGCAACCTGCTGTTCTTCGAACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCATTAATTAATTGTGAAGGTGCTGAGGATGTGGTACTCGCTGTGAATTCTACGAAAAATTTGGGCACAACATCCAACCCTGCTAACTCCTTAACGTATCCTGGGGGAGTTCTTTGTGCAAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCCGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAAGCCAACTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACCGGTAGTCAAATCATCATGCCACTTGGCCACACAATCGAGCATGAAGAGTTGCTTGAAGTAATTCGACTTGAAGGACATCCAATGGTACAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCCCCAATTGATGAGATGTTTCCAGACGATGCTCCACTGCTGCCTTCTGGCTTTCGAATTATCCCATTGGATTCCAGAACAGTTGAGTATAATTGTTTCACATGGATTTGTATTTGTCCTCCGTACTTAATCAGAAGACAAATTCTTGATGTGATTATTGTAACTCTGGCTAGTGATGCTAAAGGGACATTGACTACACAACGGACTCTGGATCTAACATCAAGTCTTGAAGTGGGCTCTGGAACAAGCAATAGTGCTGGAGATGCATCGTCCAGTCAGAGCTCTAGATCAGTGTTAACTATCGCATTCCAGTTTCCTTTCGAAAGCAGCATGCAGGATAACGTAGCAAACATGGCACACCAGTATGTACGTAGCGTCATTTCCTCGGTGCAGAGAGTTGCAATGGCCATATCTCCATCTGGGGGCAGTCCAGCATTAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTACCAATTGGGAACAGAGTTGATCAGGTCAGATTCCATGGAAAGTGATTCCCTGTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGTCACTGCCTGTTTTCATGTTTGCAAACCAAGCTGGGCTTGACATGTTAGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATTTTCGACGAGGCGGGTCGCAAAGCTTTGTGTTCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTACCTGGAGGAATCTGTGCGTCGACAATGGGGCGACACGTTTCATACGAACAAGCCATTGCATGGAAAGTCCTCGAGGCAGACGAGACGACAGTCCATTGCCTTGCCTTCTCTTTCATGAACTGGTCTTTTGTTTGA 2526 46.04 MAMAIAHHRESSSGSITRHLDSTGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNLGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTVEYNCFTWICICPPYLIRRQILDVIIVTLASDAKGTLTTQRTLDLTSSLEVGSGTSNSAGDASSSQSSRSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSYQLGTELIRSDSMESDSLLKNLWNHQDAILCCSLKSLPVFMFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFMNWSFV 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45297684 45304203 + Maker00000622 Lcy8g1904 640796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1904 841 Pfam START domain 186 340 IPR002913 GO:0008289(InterPro)
Lcy8g1904 841 Coils Coil 80 121 - -
Lcy8g1904 841 Pfam MEKHLA domain 697 840 IPR013978 -
Lcy8g1904 841 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Lcy8g1904 841 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Lcy8g1904 841 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Lcy8g1904 841 ProSiteProfiles START domain profile. 161 350 IPR002913 GO:0008289(InterPro)
Lcy8g1904 841 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Lcy8g1904 841 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Lcy8g1904 841 SMART START_1 130 341 IPR002913 GO:0008289(InterPro)
Lcy8g1904 841 CDD bZIP 77 116 - -
Lcy8g1904 841 Gene3D - 178 346 IPR023393 -
Lcy8g1904 841 SUPERFAMILY Bet v1-like 163 343 - -
Lcy8g1904 841 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Lcy8g1904 841 Gene3D - 19 91 - -
Lcy8g1904 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 189 567 IPR044830 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2020 Lcy-Chr2:38273288 Lcy8g1904 Lcy-Chr8:45297684 2.77E-16 dispersed
Lcy5g1666 Lcy-Chr5:38885621 Lcy8g1904 Lcy-Chr8:45297684 0 dispersed
Lcy8g1904 Lcy-Chr8:45297684 Lcy9g1630 Lcy-Chr9:41439560 0 dispersed
Lcy8g1904 Lcy-Chr8:45297684 Lcy11g0449 Lcy-Chr11:9211654 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20577 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1904 K09338 - csv:101215773 1490.32