Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1907 ATGCTTAAGAAGAAGAAGAAGGGGGACGGATTTGTTCCACACGGGTTTCTTTTTTTCTTCTGGGTTTACTGGGGTTCTTCTTCTTTTTCTTGGGTTTTGACTCTAATCTGCTCTGCCTCTCACTCACATCATCGCGCGAATCTGTTTGTTTTCTTCTTTTCAATCAAGGAAGCTGTATTATTGGCGATAAACGAAACTGGGTTTTCCTGGCCCATTTCAACCGAGAAAGGCATTACATTTGGGGAAAACGCAATCATTCGAATGAAAGAAGCAGAGAAAAACTTAGATCCTCAACTATGGCATGCCTGTGCTGGAGGCATGGTCCAGATGCCTGGAATTAACTCCAAGGTCTTTTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCCCTTATTCCTTGTCGAGTGCTCGCCGTCAAGTTCTTGGCGGACCATGAAACCGATGAAGTTTATGCCAATATAAGATTGGTTCCTCTGGCGAGTAACGAACTCAATTTTGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCTGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCCAACAACGGCGGTGGGTTCTCCGTTCCAAGGTACTGTGCGGAGACGATTTTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTTCACGGCGAGGTTTGGAAGTTTCGGCATATTTATAGAGGGACGCCTCGCCGGCATTTGTTAACTACTGGGTGGAGTACTTTTGTCAATCAGAAGAAGCTCGTCGCGGGCGATTCGATTGTCTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGTAATTGGGTGTGCCGCCGATCACCCTTATGGCTGGAATCCCGGCGGTGGAAATTGCATCCCACCTTACGGTGGATTGACGATGTTTCTGAGAGATGAGGACAGCAAGTTGAGTAGAAAAGGGTCTTTGGGTTCTAATGGTGGTGGGAATTTGAGGGGAAAAGGCAAAGTGAGGCCAGAATCAGTGATTGAAGCAGCGGCGCTTGCGGCGAGTGGGCAGCCATTTGAGGTGGTTTATTACCCACGCGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTTCGAGCTGCCATGAGGATCCAGTGGTGCTCTGGTATGAGGTTCAAAATGCCATTTGAGACTGAGGATTCTTCTCGAATCAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCGTTCTCTCCACCGAGAAAGAAGTTCCGTCTACCACAACACCCAGACTTTCCCCTCGACAGCCAATTTCCATTGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCTATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTGTCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCCAGAATTTCCAATAGATCAGTTACAGACCACAAAGACAGCAGCAGTCAGAACTCATCAGCGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCTGATTCGGTGAAGAAGCATCAATTTTTACTCTTTGGTCAGCCTATACTCACTGAACAGCAAATCACTTGCAACTCTACCAGTGACATTCACTCCCCTCGGACGGAAAAAAGCTCCTTAGATGCGAATCTGGAGAGAGTGAAGTTTCTATCTGATGGCTCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGATCAGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGTCGGACACTCAACCTTTCGGTCATTGGCTCATATGAAGAACTATACAGGAGGCTCGCAAGCATGTTCGGAATGGAAAAACCAGACATTCTCAGCCATGTCCTGTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGATAAACCCTTCAGTGACTTTATCAAAACAGCTAGAAGACTGACGATTCTAACCGACTCGGGGTCCGACAAGATCGGAAGGACACTGATGGATGGAATGCGAAGTGCTGAAAATGGATTAGATGCCTCAAACAAGACCGGCCCTTTGAGCATATTTGCGTAG 2406 48.05 MLKKKKKGDGFVPHGFLFFFWVYWGSSSFSWVLTLICSASHSHHRANLFVFFFSIKEAVLLAINETGFSWPISTEKGITFGENAIIRMKEAEKNLDPQLWHACAGGMVQMPGINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVYANIRLVPLASNELNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRVIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDSKLSRKGSLGSNGGGNLRGKGKVRPESVIEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRISNRSVTDHKDSSSQNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCNSTSDIHSPRTEKSSLDANLERVKFLSDGSGSTFKQQISPNKSPGSGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLASMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKIGRTLMDGMRSAENGLDASNKTGPLSIFA 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45332279 45336204 - Maker00000664 Lcy8g1907 640799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1907 801 FunFam Auxin response factor 405 478 - -
Lcy8g1907 801 Pfam Auxin response factor 367 450 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy8g1907 801 Pfam B3 DNA binding domain 199 300 IPR003340 GO:0003677(InterPro)
Lcy8g1907 801 FunFam Auxin response factor 197 301 - -
Lcy8g1907 801 Gene3D - 197 301 IPR015300 -
Lcy8g1907 801 CDD B3_DNA 198 299 IPR003340 GO:0003677(InterPro)
Lcy8g1907 801 Gene3D - 405 478 - -
Lcy8g1907 801 SUPERFAMILY DNA-binding pseudobarrel domain 194 304 IPR015300 -
Lcy8g1907 801 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 94 773 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy8g1907 801 MobiDBLite consensus disorder prediction 578 593 - -
Lcy8g1907 801 MobiDBLite consensus disorder prediction 573 602 - -
Lcy8g1907 801 ProSiteProfiles B3 DNA-binding domain profile. 199 301 IPR003340 GO:0003677(InterPro)
Lcy8g1907 801 SMART B3_2 199 301 IPR003340 GO:0003677(InterPro)
Lcy8g1907 801 Gene3D - 689 773 - -
Lcy8g1907 801 ProSiteProfiles PB1 domain profile. 689 769 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1907 Lcy-Chr8:45332279 Lcy9g2249 Lcy-Chr9:47000188 9.22E-74 dispersed
Lcy13g1587 Lcy-Chr13:34745385 Lcy8g1907 Lcy-Chr8:45332279 5.80E-111 transposed
Lcy1g1368 Lcy-Chr1:13243000 Lcy8g1907 Lcy-Chr8:45332279 0 wgd
Lcy10g1758 Lcy-Chr10:41995200 Lcy8g1907 Lcy-Chr8:45332279 2.03E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20578 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1907 K14486 - csv:101216500 1352.81