Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1911 ATGTACCCTCGACTAAGAGACCCAGTTTCTGTTTTGGACTGTCTCTCTGTCGCTCTCGTTCCGTCTCTTTCTCATACTCATGGAAGCGCTTCTTCTGGGTTGATTCCATTAGAACTGCAGCCAAAGGTTTCATTTGGGAAGATCTTTATGGCTTATGGTAGTTCTAGATCCGTAAGATTCCAAGATGATCTTGAATCATCTACCCTGCCTACTATCAATGGTGGTGGTGTGAAGAAGATCATATACAACATTGATGGCTCACAAATACCGGAATCGAGCGGCAAGAGAACTGAGGTTTCTGGGAAGTCTGGAAGATCCTTGAGAGCGAAAGTTTTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTGCAGAGAAAAATATTGGATCCTAGGGGACAAGCCATAAGGCGATGGAATAAGATATTTTTAGTAGCTTGTTTAGTCTCTTTGTTTGTAGACCCGCTTTTCTTTTACTTGCCTGTGGTCCGGAATGAGGTCTGCATCGATATAGGAGTAGGTCTCGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTCCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTACGCCATGGTTTCTGGATTGATTTCATTGCAGCCGTGCCAGTTCCTCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCAACAATGACAAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTGCCGAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATCGAGCGACAAGAAGCTTGCTGGAGAAGGCTTTGCAAGTTTGACAAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGCCGATGACCCTCAAAGGGACTCATGGTTTAAGACAAGTAACATTACGAGTTCCTGCAATCCAAATGATCCCTTTTATCAATTTGGTATATACGGTGATGCGATAACTTTTGATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTGAGTTCCTTGGGGCAAAATCTAGCCACAAGCACTTTTGTTGGGGAAATAATATTTGCCATAATAGTGGCAACTCTTGGACTGGTTTTGTTTGCATTGCTCATTGGCAATATGCAGAAATACCTCCAATCGACGACTGTTCGGTTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTACAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGCCCTGCTTAGAAGCCTTCCATTGGACCTACGAAGAGACATAAAACGTCATCTTTGCCTCGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGACGCAATATGCGAAAGGCTCAAACCTGCCTTGAGCACAGAAGGCACATTTCTCGTGCGAGAAGGCGACCCGGTCAATGAAATGCTATTCATAATCAGAGGTCATCTCGATTCATACACCACTAATGGCGGTAGAACTGGATTTTTCAACTCCTGTCGTATCGGCCCAGGTGATTTCTGTGGTGAGGAACTGCTGACTTGGGCTCTCGATCCTCGTCCAAGCGTTGTACTTCCTTCTTCCACTCGGACGGTCAAAGCCATATCTGAAGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTCAGACACAAGTTCCGATTCTACTCACATCAATGGCGAACATGGGCTGCGTGCTTTGTCCAAGCAGCGTGGCGGCGATATAAGAGACGTAAGGAAAGAGCTGAGCTCAGGGCTAGAGAGAGCTATCCAGCTACGAAGCTCGAGTCCCCACTTTCACCACAGACTGCATCAAACGTGGATGCACGTTCAGGAAACGCTAGAAGAGGCATGAATAAGCGTTGTGCGTCGGATGCTGGAGTCGTAAGCTCGTTGCAGAAGCCAGAAGAGCCTGACTTCTCCATTGTTGAGGAATGA 2250 44.84 MYPRLRDPVSVLDCLSVALVPSLSHTHGSASSGLIPLELQPKVSFGKIFMAYGSSRSVRFQDDLESSTLPTINGGGVKKIIYNIDGSQIPESSGKRTEVSGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQAIRRWNKIFLVACLVSLFVDPLFFYLPVVRNEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDFIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCKFDKSCKDGFFDCHKADDPQRDSWFKTSNITSSCNPNDPFYQFGIYGDAITFDVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARESYPATKLESPLSPQTASNVDARSGNARRGMNKRCASDAGVVSSLQKPEEPDFSIVEE 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45376747 45382783 - Maker00001509 Lcy8g1911 640803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1911 749 MobiDBLite consensus disorder prediction 691 749 - -
Lcy8g1911 749 FunFam Cyclic nucleotide-gated ion channel 1 527 645 - -
Lcy8g1911 749 MobiDBLite consensus disorder prediction 699 716 - -
Lcy8g1911 749 Gene3D - 137 453 - -
Lcy8g1911 749 ProSiteProfiles cAMP/cGMP binding motif profile. 529 626 IPR000595 -
Lcy8g1911 749 FunFam Cyclic nucleotide-gated ion channel 1 456 520 - -
Lcy8g1911 749 SMART cnmp_10 529 660 IPR000595 -
Lcy8g1911 749 SUPERFAMILY Voltage-gated potassium channels 129 451 - -
Lcy8g1911 749 SUPERFAMILY cAMP-binding domain-like 459 654 IPR018490 -
Lcy8g1911 749 CDD CAP_ED 529 660 IPR000595 -
Lcy8g1911 749 PRINTS EAG/ELK/ERG potassium channel family signature 193 202 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy8g1911 749 PRINTS EAG/ELK/ERG potassium channel family signature 398 415 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy8g1911 749 PRINTS EAG/ELK/ERG potassium channel family signature 424 435 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy8g1911 749 PRINTS EAG/ELK/ERG potassium channel family signature 492 499 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy8g1911 749 PRINTS EAG/ELK/ERG potassium channel family signature 442 451 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy8g1911 749 PRINTS EAG/ELK/ERG potassium channel family signature 310 320 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy8g1911 749 Gene3D Jelly Rolls 527 647 IPR014710 -
Lcy8g1911 749 Pfam Ion transport protein 137 456 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1911 749 Gene3D Helix hairpin bin 456 520 - -
Lcy8g1911 749 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 107 711 - -
Lcy8g1911 749 Pfam Cyclic nucleotide-binding domain 552 612 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0256 Lcy-Chr10:4165205 Lcy8g1911 Lcy-Chr8:45376747 5.71E-215 dispersed
Lcy11g2043 Lcy-Chr11:44079285 Lcy8g1911 Lcy-Chr8:45376747 1.91E-147 dispersed
Lcy12g0123 Lcy-Chr12:1551768 Lcy8g1911 Lcy-Chr8:45376747 2.46E-233 dispersed
Lcy4g1736 Lcy-Chr4:43233405 Lcy8g1911 Lcy-Chr8:45376747 1.70E-43 dispersed
Lcy6g0087 Lcy-Chr6:819610 Lcy8g1911 Lcy-Chr8:45376747 1.49E-123 dispersed
Lcy7g1904 Lcy-Chr7:43897904 Lcy8g1911 Lcy-Chr8:45376747 1.21E-66 dispersed
Lcy8g1911 Lcy-Chr8:45376747 Lcy9g1763 Lcy-Chr9:42827391 1.32E-256 dispersed
Lcy6g0312 Lcy-Chr6:2939425 Lcy8g1911 Lcy-Chr8:45376747 4.97E-113 transposed
Lcy6g1250 Lcy-Chr6:15082756 Lcy8g1911 Lcy-Chr8:45376747 3.91E-123 transposed
Lcy1g1365 Lcy-Chr1:13200281 Lcy8g1911 Lcy-Chr8:45376747 1.37E-296 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1911 K05391 - csv:101210775 1339.71