Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1915 | ATGGAACCAACCCAGGACCTTGCCACCTGCAACAATGGCCACGTTTCGCTCAATGGGTTTTGCTTCAAGGATCCACTCTACTGGTCTGCCGCGGCCGAGGGGCTCAAAGGGAGCCACGTCGACGAGGTCAAGAGGATGGTCGCCGAGTACCGCCGCCCGGTCGTCCGTCTCGGCGGAGAGAGCCTGACCGTTGGGCAGGTGGCCGCGGTGGCTCTCCATGACGGCGGAGTGAGGGTCGACCTGAATGAGTCCGCAAGGGCCGGTGTGAAGGCGAGTAGTGATTGGGTGATGGATAGCATGACCAAAGGAACCGATAGTTATGGAGTCACCACCGGCTTTGGTGCAACCTCTCATAGAAGGACCAACCAAGGAGCTGCCTTGCAGAAGGAGCTTATTAGGTAA | 402 | 58.96 | MEPTQDLATCNNGHVSLNGFCFKDPLYWSAAAEGLKGSHVDEVKRMVAEYRRPVVRLGGESLTVGQVAAVALHDGGVRVDLNESARAGVKASSDWVMDSMTKGTDSYGVTTGFGATSHRRTNQGAALQKELIR | 133 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 45439277 | 45439678 | + | Maker00000713 | Lcy8g1915 | 640807 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1915 | 133 | Gene3D | - | 17 | 133 | IPR024083 | - | |
| Lcy8g1915 | 133 | Pfam | Aromatic amino acid lyase | 62 | 133 | IPR001106 | - | |
| Lcy8g1915 | 133 | PANTHER | HISTIDINE AMMONIA-LYASE | 21 | 133 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
| Lcy8g1915 | 133 | SUPERFAMILY | L-aspartase-like | 24 | 133 | IPR008948 | GO:0003824(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy8g1915 | Lcy-Chr8:45439277 | Lcy13g1039 | Lcy-Chr13:22711472 | 6.25E-55 | dispersed | |
| Lcy7g0646 | Lcy-Chr7:5895435 | Lcy8g1915 | Lcy-Chr8:45439277 | 2.44E-45 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g1915 | K10775 | - | csv:101218156 | 213.772 |