Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1916 ATGTTGGTCCGAATCAACACCCTTCTCCAAGGCTATTCCGGCATCAGATTCGAGATTTTGGAGTCAATTACCAAGCTCCTCAACCACAACGTCACTCCCTGCCTTCCACTGCGAGGAACCATCACGGCCTCCGGTGACTTGGTTCCCTTTTCCTATCTTGCAGGCCTTTTGACCGGCCGGCCCAATGCCAAGGCCGTCGGCCCTGCCGGCGAGATGCTCGATGCCGGAACAGCCTTTAAACTCGCCGGCATTGGTGGGTTCTTCGAGCTGCAGCCTAAAGAGGGTCTCGCCCTTGTCAATGGGACGGGTGTTGGTTCTGGTTTGGCTTCAATTGTTCTGTTTGAGGCCAATGTACTTGCTCTTCTGTCCGAAGTTATTTCGGCAATTTTTGCTGAAGTTATGCAGGGAAAGCCCGAGTTTACCGATCATTTGACTCATAAATTGAAGCACCATCCAGGTCAGATTGAAGCTGCGGCTATAATGGAACACATTTTGGACGGGAGTGCTTTCATTAAAGACGCTCAGAAGTTACATGAGTTGGACCCTCTGCAAAAGCCTAAACAAGATCGTTATGCTCTTCGGACTTCACCTCAATGGTTAGGCCCTCAAATTGAAGTGATTCGACATTCGACGAGATCGATCGAGAGAGAGATCAACTCGGTGAACGACAATCCATTGATTGATGTTTCAAGAAATAAAGCTCTACATGGAGGCAATTTTCAAGGAACTCCAATTGGGGTGTCCATGGATAACACTAGATTGGCTCTTGCCTCAATTGGAAAGCTCTTGTTTGCTCAATTCTCTGAGCTTGTGAATGATTTCTATAACAATGGGCTGCCTTCAAACCTCTCTGGAGGAAGTAATCCAAGCTTGGATTATGGATTCAAAGGGGCCGAAATCGCCATGGCTTCTTATTGCTCGGAGTTGCAGTACTTGGCAAATCCGGTCACCAACCATGTTCAAAGTGCGGAGCAACACAACCAAGATGTGAACTCGTTGGGACTAATTTCTTCAAGAAAAACAGCTGAGGCAATAGATATCTTGAAGCTGATGAGCACAACTTTCCTGGTTGCTCTCTGCCAAGCCATAGATTTGAGACACATAGAAGAGAATTTGAAGAGCACAGTGAAAAACACAGTGAGTCAAGTGGCCAAAAAGGTTTTAACGATTGGAGTAAACGGAGAGCTTCATCCTTCAAGATTCTGCGAGAAAGATTTGCTCAAAGTCATTGACAGGGAACATGTTTTTGGTTACATTGATGATCCGTGCAGCATGACATATCCTTTAATGCAGAAGCTGAGGCAAGTTCTCGTAGAACATGCGTTGAACAACAGTGACGATCTGAAGAATTCAAAGTCGTCAATCTTTCTAAAAATTGGGGCTTTCGAGGAAGAACTGAAGACCCTTTTGCCAAAAGAAGTAGAAAGTGGAAGGCAAGCCATTGCAAAAGGAAAAGCAGCAATTCCGAACAAGATCAAGGATTGCAGATCATACCCAGTTTACAGATTTGTGAGAGAAGAATTGGGAACTGATATTTTGACAGGAGAGAAAGTGAAATCCCCTGGGGAAGAATTTGACAAAGTTTTTACTGCAATTTGTGAGGGGAAAATCATCGATCCTCTGCTTGAATGCCTTGAGCGTTGGGATGGGGCTCCTCTTCCTGTAAATTAA 1671 45.3 MLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYLAGLLTGRPNAKAVGPAGEMLDAGTAFKLAGIGGFFELQPKEGLALVNGTGVGSGLASIVLFEANVLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAFIKDAQKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTRSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLKSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREHVFGYIDDPCSMTYPLMQKLRQVLVEHALNNSDDLKNSKSSIFLKIGAFEEELKTLLPKEVESGRQAIAKGKAAIPNKIKDCRSYPVYRFVREELGTDILTGEKVKSPGEEFDKVFTAICEGKIIDPLLECLERWDGAPLPVN 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45441708 45443378 + Maker00000598 Lcy8g1916 640808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1916 556 FunFam Phenylalanine ammonia-lyase 103 402 - -
Lcy8g1916 556 Gene3D - 369 490 IPR023144 -
Lcy8g1916 556 Gene3D - 1 102 IPR024083 -
Lcy8g1916 556 Gene3D Fumarase/aspartase (Central domain) 104 550 - -
Lcy8g1916 556 Pfam Aromatic amino acid lyase 1 381 IPR001106 -
Lcy8g1916 556 SUPERFAMILY L-aspartase-like 1 555 IPR008948 GO:0003824(InterPro)
Lcy8g1916 556 FunFam Phenylalanine ammonia-lyase 369 490 - -
Lcy8g1916 556 CDD PAL-HAL 1 366 IPR001106 -
Lcy8g1916 556 PANTHER HISTIDINE AMMONIA-LYASE 1 555 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy8g1916 556 NCBIfam phenylalanine ammonia-lyase 1 546 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1916 Lcy-Chr8:45441708 Lcy13g1039 Lcy-Chr13:22711472 1.14E-276 dispersed
Lcy1g1358 Lcy-Chr1:13140870 Lcy8g1916 Lcy-Chr8:45441708 5.15E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1916 K10775 - csv:101218156 1055.82