Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1937 | ATGCTTTCACTGCGTTCATGTTACTATCTACGCCCCGTCACATTGCCTCATTCCCAATTCAAGAATCTCATCTTCTCCAACAAACCTCCATCTTTCAAACCCATCTTTCAGAAATTTGTTTCGGCAATGTCTTCTCGCCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCGCGGGCCGCTGCCAAGAAGAAGCCTGTAAATTCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCATTAGATTCTCCTCCGAAACCTAGCTCTTCACTTGCTCTGGAGTCAACGCCGCCTATTGAATCGCAGGGCGGCAACTCGACCTCAACTTCGGACAATCATGGAGGTCCTCATCTGGGAAAGTCCGAGGACGCTGTAAATTTGGGAGAAACCAAGTTGCGTCAGGATAATGGTGGCGGTGTTGGAACCAAGACGTGCGCGACTAATGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAATTCGAAAAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCCTGTTTGTTTCTGTGTTTGGGCTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACTGATATAGTGTGCAACATGTTGAGGACCGTCATGGATACTACACCTGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCACCAGCACACGAAGGGCTTGAATTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCCGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCATCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTGCCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATAAGATTACTGCAGACAAAATTGCGGATTGGACTGGCTGAGCAGACTCTTTTAGCTGCACTAGGGCAAGCTGCTGTATATGCTGAAAAACATTCAACGCCACCACCAAACGTTCAATCTCCTCTAGAAGAGGCTGCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCTGTTTATGATAAACTTGTCCCTGCACTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAGGGAATACATTACTTGGAAGATGGTTCAGTTGAGATATATAGTCGAAATGCTGAACGAAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGAATAAAGAAACCATCTGTACGATCATTTATTTTGGATTGTGAGCTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTGCCTTTCCAGATTCTGAGTACCCGAGCTCGCAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTTTGTGTATTTGCTTTTGATTTACTGTATCTTGATGGTCAACCACTTATCCAGAGAGAACTTAATGTTCGCCGAGAGCTTCTCTATGACTCATTTATGGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAACAACAAACGATCTTGAGGAAATACAGAAATTCCTCGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATTATCAAAACATTGAACCGGGATGCTACCTATGAGCCTTCCAAGAGGTCACATAACTGGTTAAAACTTAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTCCTCCTTGCCTGTTATGACAATGACAACGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGTTTTTCTGAAGCTATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTTTGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCTGACAAGGTTGTATTTGGAATTTCTCTTCGATTTCCACGTCTTGTTCGAGTAAGGAAAGACAAAAATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTGA | 2328 | 43.26 | MLSLRSCYYLRPVTLPHSQFKNLIFSNKPPSFKPIFQKFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDSPPKPSSSLALESTPPIESQGGNSTSTSDNHGGPHLGKSEDAVNLGETKLRQDNGGGVGTKTCATNVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPCLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNVQSPLEEAAKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGIHYLEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFMEEPGYFQFATAITTNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRFGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKVVFGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD | 775 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 45614717 | 45623241 | - | Maker00000825 | Lcy8g1937 | 640829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1937 | 775 | MobiDBLite | consensus disorder prediction | 81 | 113 | - | - | |
Lcy8g1937 | 775 | MobiDBLite | consensus disorder prediction | 60 | 121 | - | - | |
Lcy8g1937 | 775 | MobiDBLite | consensus disorder prediction | 742 | 775 | - | - | |
Lcy8g1937 | 775 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 165 | 416 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lcy8g1937 | 775 | Gene3D | DNA ligase/mRNA capping enzyme | 434 | 554 | - | - | |
Lcy8g1937 | 775 | FunFam | DNA ligase | 160 | 427 | - | - | |
Lcy8g1937 | 775 | SUPERFAMILY | Nucleic acid-binding proteins | 612 | 761 | IPR012340 | - | |
Lcy8g1937 | 775 | Gene3D | - | 555 | 608 | - | - | |
Lcy8g1937 | 775 | FunFam | DNA ligase | 609 | 771 | - | - | |
Lcy8g1937 | 775 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 417 | 610 | - | - | |
Lcy8g1937 | 775 | Gene3D | - | 159 | 427 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lcy8g1937 | 775 | Pfam | ATP dependent DNA ligase domain | 434 | 604 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lcy8g1937 | 775 | CDD | Adenylation_DNA_ligase_I_Euk | 414 | 607 | - | - | |
Lcy8g1937 | 775 | Pfam | DNA ligase N terminus | 187 | 358 | IPR012308 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lcy8g1937 | 775 | Pfam | ATP dependent DNA ligase C terminal region | 629 | 743 | IPR012309 | GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lcy8g1937 | 775 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 506 | 642 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lcy8g1937 | 775 | Gene3D | - | 609 | 774 | IPR012340 | - | |
Lcy8g1937 | 775 | NCBIfam | ATP-dependent DNA ligase | 434 | 758 | IPR000977 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro) | |
Lcy8g1937 | 775 | MobiDBLite | consensus disorder prediction | 750 | 765 | - | - | |
Lcy8g1937 | 775 | CDD | OBF_DNA_ligase_I | 612 | 760 | - | - | |
Lcy8g1937 | 775 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 578 | 604 | IPR016059 | GO:0003909(InterPro) | |
Lcy8g1937 | 775 | FunFam | DNA ligase | 431 | 554 | - | - | |
Lcy8g1937 | 775 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 156 | 772 | IPR050191 | GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g0214 | Lcy-Chr3:6235407 | Lcy8g1937 | Lcy-Chr8:45614717 | 2.32E-20 | dispersed | |
Lcy3g0216 | Lcy-Chr3:6263215 | Lcy8g1937 | Lcy-Chr8:45614717 | 1.11E-27 | dispersed | |
Lcy8g1937 | Lcy-Chr8:45614717 | Lcy3g0215 | Lcy-Chr3:6248827 | 1.72E-21 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g1937 | K10747 | - | csv:101213447 | 1358.2 |