Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1937 ATGCTTTCACTGCGTTCATGTTACTATCTACGCCCCGTCACATTGCCTCATTCCCAATTCAAGAATCTCATCTTCTCCAACAAACCTCCATCTTTCAAACCCATCTTTCAGAAATTTGTTTCGGCAATGTCTTCTCGCCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCGCGGGCCGCTGCCAAGAAGAAGCCTGTAAATTCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCATTAGATTCTCCTCCGAAACCTAGCTCTTCACTTGCTCTGGAGTCAACGCCGCCTATTGAATCGCAGGGCGGCAACTCGACCTCAACTTCGGACAATCATGGAGGTCCTCATCTGGGAAAGTCCGAGGACGCTGTAAATTTGGGAGAAACCAAGTTGCGTCAGGATAATGGTGGCGGTGTTGGAACCAAGACGTGCGCGACTAATGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAATTCGAAAAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCCTGTTTGTTTCTGTGTTTGGGCTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACTGATATAGTGTGCAACATGTTGAGGACCGTCATGGATACTACACCTGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCACCAGCACACGAAGGGCTTGAATTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCCGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCATCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTGCCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATAAGATTACTGCAGACAAAATTGCGGATTGGACTGGCTGAGCAGACTCTTTTAGCTGCACTAGGGCAAGCTGCTGTATATGCTGAAAAACATTCAACGCCACCACCAAACGTTCAATCTCCTCTAGAAGAGGCTGCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCTGTTTATGATAAACTTGTCCCTGCACTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAGGGAATACATTACTTGGAAGATGGTTCAGTTGAGATATATAGTCGAAATGCTGAACGAAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGAATAAAGAAACCATCTGTACGATCATTTATTTTGGATTGTGAGCTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTGCCTTTCCAGATTCTGAGTACCCGAGCTCGCAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTTTGTGTATTTGCTTTTGATTTACTGTATCTTGATGGTCAACCACTTATCCAGAGAGAACTTAATGTTCGCCGAGAGCTTCTCTATGACTCATTTATGGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAACAACAAACGATCTTGAGGAAATACAGAAATTCCTCGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATTATCAAAACATTGAACCGGGATGCTACCTATGAGCCTTCCAAGAGGTCACATAACTGGTTAAAACTTAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTCCTCCTTGCCTGTTATGACAATGACAACGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGTTTTTCTGAAGCTATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTTTGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCTGACAAGGTTGTATTTGGAATTTCTCTTCGATTTCCACGTCTTGTTCGAGTAAGGAAAGACAAAAATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTGA 2328 43.26 MLSLRSCYYLRPVTLPHSQFKNLIFSNKPPSFKPIFQKFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDSPPKPSSSLALESTPPIESQGGNSTSTSDNHGGPHLGKSEDAVNLGETKLRQDNGGGVGTKTCATNVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPCLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNVQSPLEEAAKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGIHYLEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFMEEPGYFQFATAITTNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRFGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKVVFGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45614717 45623241 - Maker00000825 Lcy8g1937 640829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1937 775 MobiDBLite consensus disorder prediction 81 113 - -
Lcy8g1937 775 MobiDBLite consensus disorder prediction 60 121 - -
Lcy8g1937 775 MobiDBLite consensus disorder prediction 742 775 - -
Lcy8g1937 775 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 165 416 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy8g1937 775 Gene3D DNA ligase/mRNA capping enzyme 434 554 - -
Lcy8g1937 775 FunFam DNA ligase 160 427 - -
Lcy8g1937 775 SUPERFAMILY Nucleic acid-binding proteins 612 761 IPR012340 -
Lcy8g1937 775 Gene3D - 555 608 - -
Lcy8g1937 775 FunFam DNA ligase 609 771 - -
Lcy8g1937 775 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 417 610 - -
Lcy8g1937 775 Gene3D - 159 427 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy8g1937 775 Pfam ATP dependent DNA ligase domain 434 604 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy8g1937 775 CDD Adenylation_DNA_ligase_I_Euk 414 607 - -
Lcy8g1937 775 Pfam DNA ligase N terminus 187 358 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy8g1937 775 Pfam ATP dependent DNA ligase C terminal region 629 743 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy8g1937 775 ProSiteProfiles ATP-dependent DNA ligase family profile. 506 642 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy8g1937 775 Gene3D - 609 774 IPR012340 -
Lcy8g1937 775 NCBIfam ATP-dependent DNA ligase 434 758 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Lcy8g1937 775 MobiDBLite consensus disorder prediction 750 765 - -
Lcy8g1937 775 CDD OBF_DNA_ligase_I 612 760 - -
Lcy8g1937 775 ProSitePatterns ATP-dependent DNA ligase signature 2. 578 604 IPR016059 GO:0003909(InterPro)
Lcy8g1937 775 FunFam DNA ligase 431 554 - -
Lcy8g1937 775 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 156 772 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0214 Lcy-Chr3:6235407 Lcy8g1937 Lcy-Chr8:45614717 2.32E-20 dispersed
Lcy3g0216 Lcy-Chr3:6263215 Lcy8g1937 Lcy-Chr8:45614717 1.11E-27 dispersed
Lcy8g1937 Lcy-Chr8:45614717 Lcy3g0215 Lcy-Chr3:6248827 1.72E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1937 K10747 - csv:101213447 1358.2