Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1939 ATGCCAAAGGAAAATGCACACGTGAAAGTAAATCCAAAACAGCCAGCTTACATGGGCCTTGCAAAAGCAGGCTCCTCAAATGGGCTGGGTTACAATTTGTTTGGGCCTAGTGGATCGAATACCATAATGTTTGATATGGAGCAATTTGGGAAGCAGCATTTAATGATGAACATCAATGACTTTGAGCTTCAAGATTTCATCCATGGCGACAACCTCGATCTGGTCAATCTCATTCGCAGAGAACACGAAAATTCAATACTCAACTTTGATCTTGATTTCATGAATGGTTGCTCGGTCGACAATCGTCTCGATCCAAGTGCCGAATACATTCTAGATTCCAATTTGGTCATGAATTCTGATCCTAATTCACTGTTTAGTACATTGGAGAGTTTCAACAGTATCATGAAAGAAGTCGAAAACGAAAACGAAGACGAAGACGAAGACGACACTTCTGTAGAGAACTCTTCCATCACAATGACGACAACAAAGAAGCCAAAGGTCGATAGATCAAGAACTTTGATTTCCGAGCGAAGGAGGAGAGGAAGGATGAAGGAAAAGCTCTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCCATTGTTGGGGATGCAGTGCTATACGTGAAAGAGCTTCAAATGCAGGCCAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAATCCTCAATCAATGAAACACAGACACATCATCGCCAATCTGATCAAACCCACAAGAAGATTCAAACTTCACGATCAGATCAATTCTTCCCCACCAAAATCATTCAGCTGGATGTGTTTCAAGTGGAGGAAAGAGGCTTTTATTTGAGGCTGGTTTGCAAGATGGGTGAAAGAGTAGCCATTTCTCTTTACAAAGTTCTTGAATCCCTCACCAGTTTCAATATTCAAAGCTCCAACTTGGCCTCTGCTTCTGACAGATTCATTCTCACTGCTACAATTAATGTGAGAGATTGTGAGGTGGACATGAACTTGCCAAATCTGAAGCTTTGGCTTACTGGGGCACTTCTTAATCATGGATTTGAGTTTTAA 1059 41.36 MPKENAHVKVNPKQPAYMGLAKAGSSNGLGYNLFGPSGSNTIMFDMEQFGKQHLMMNINDFELQDFIHGDNLDLVNLIRREHENSILNFDLDFMNGCSVDNRLDPSAEYILDSNLVMNSDPNSLFSTLESFNSIMKEVENENEDEDEDDTSVENSSITMTTTKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQTHHRQSDQTHKKIQTSRSDQFFPTKIIQLDVFQVEERGFYLRLVCKMGERVAISLYKVLESLTSFNIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45641550 45645606 + Maker00000503 Lcy8g1939 640831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1939 352 Gene3D - 159 234 IPR036638 GO:0046983(InterPro)
Lcy8g1939 352 SMART finulus 173 222 IPR011598 GO:0046983(InterPro)
Lcy8g1939 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 245 IPR036638 GO:0046983(InterPro)
Lcy8g1939 352 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 350 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy8g1939 352 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 163 233 - -
Lcy8g1939 352 Pfam Helix-loop-helix DNA-binding domain 172 217 IPR011598 GO:0046983(InterPro)
Lcy8g1939 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983(InterPro)
Lcy8g1939 352 Coils Coil 128 148 - -
Lcy8g1939 352 MobiDBLite consensus disorder prediction 139 171 - -
Lcy8g1939 352 Coils Coil 213 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0177 Lcy-Chr7:1575147 Lcy8g1939 Lcy-Chr8:45641550 1.84E-15 dispersed
Lcy8g1939 Lcy-Chr8:45641550 Lcy13g1474 Lcy-Chr13:33326218 4.15E-06 dispersed
Lcy8g1939 Lcy-Chr8:45641550 Lcy2g0318 Lcy-Chr2:2593551 1.54E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20581 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1939 K26214 - csv:101213681 456.062