Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1980 ATGAGGGCGTTGCAATTGCAGCTTAGAGTTGACGCCAATCTTCTAAATCCATATTGTCATTTCTGCCCTGCTTCATCTCTAAATCCCTCGCCATTGCTTGTTTTTCAACCAATAAAATTCCCCCATCTCCAGAAGTTCAAGCCTTCTCGAAGTTCCCGTCGAACCCATTTTTGTACTCCATCAACATCTTTCATCGTAGCTTCCATGGCCGATTCCTCTCTTTCCACAAGCTCAGAGGCGGAGACGAAACCTTTCTCTGTGCTCTTTGTGTGCTTGGGCAACATTTGCAGAAGCCCAGCTGCTGAAGGAGTATTCAGGGACCTTGTGAGGAAGAAGGGTCTCGATTCCAAATTCAGAATCGATTCTGCTGGCACCATTGGTTACCATGAGGGTAATGAGGCCGACCCAAGAATGAGAGCAGCCTCTAAGCGACGCGGGATAGCGATAACATCCATATCGAGGCCAATCCAGCCATCTGATTTTGTAAATTTTGATCTTATTCTTGCCATGGACAAGCAAAACAGAGAGGATATTTTAAGGGCTTTTGAACGGTGGAGAATCAGGGATACCCTTCCTCCTGATTCACATAAGAAGGTCAAATTAATGTGCTCGTATTGTAGAAAGCATGACGAAACAGAAGTACCGGATCCTTATTACGGTGGGCAACAAGGTTTTGAGAAGGTAATCCAGAAGTGCTTAAATATGTTTGTTCTGGATATGAAGTATGGATTGAAAACAAAATGGGAAGTTCTGGACTTGCTTGAAGATGCCTGTGAATCACTGTTGGAAAGCATCTTAGCAGAGAACAAACACATTTCAGATTAA 825 43.88 MRALQLQLRVDANLLNPYCHFCPASSLNPSPLLVFQPIKFPHLQKFKPSRSSRRTHFCTPSTSFIVASMADSSLSTSSEAETKPFSVLFVCLGNICRSPAAEGVFRDLVRKKGLDSKFRIDSAGTIGYHEGNEADPRMRAASKRRGIAITSISRPIQPSDFVNFDLILAMDKQNREDILRAFERWRIRDTLPPDSHKKVKLMCSYCRKHDETEVPDPYYGGQQGFEKVIQKCLNMFVLDMKYGLKTKWEVLDLLEDACESLLESILAENKHISD 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46072657 46074466 - Maker00000633 Lcy8g1980 640872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1980 274 CDD LMWPTP 86 263 - -
Lcy8g1980 274 FunFam Low molecular weight protein-tyrosine-phosphatase 84 237 - -
Lcy8g1980 274 Pfam Low molecular weight phosphotyrosine protein phosphatase 87 232 IPR023485 -
Lcy8g1980 274 SMART LMWPc_2 85 239 IPR023485 -
Lcy8g1980 274 PRINTS LMW phosphotyrosine protein phosphatase signature 87 104 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy8g1980 274 PRINTS LMW phosphotyrosine protein phosphatase signature 214 229 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy8g1980 274 PRINTS LMW phosphotyrosine protein phosphatase signature 130 146 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy8g1980 274 SUPERFAMILY Phosphotyrosine protein phosphatases I 83 234 IPR036196 -
Lcy8g1980 274 Gene3D - 68 241 - -
Lcy8g1980 274 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 67 271 IPR052995 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1980 K25307 - csv:101207515 421.394