Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1981 ATGACTACATTAGCCAGTACTTCTGAAATTGTTGAATCAACAGAAGAATTTGATTCTGAGAAAGCTGGGACGAGTTACATGCTAGATGTAGGAAAAAGGTTTTCTATAGAGGATGACATTAATCGTCTGTTTCAGGCAATTGATATCAGAACCTTGCGTAAGAGGTCAGGCCAACAACGTGATGTTGATAAAGATGCTTTGCGAAAGAGTGCAATGAAGAGACCAATTAGAGTAGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAACCAGCAAGTTTAAAGCAGGCTTTGAGGGGCTTATGCATATCTCAGGCTGCAGAAATGGCTGCTACAAAGAGGCTAACAAGGTCTGTAGGTTCACCCAGAATCTCTGAAGCAGGAACTATCAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATCTGGTGTGCCTGTAAATGAAAGCAAAGCAAATTTGGTAGAAATTTCCATTGTTTCGGAAAGAATTATGTCCACTTTTCAAAATAAGATGCCTGAATTGTTGCATAAAACTGAGGCAGATATATCAAACCAAGGAGCTGAGTCTTCTTCTCTTAAGGACACGGGGGTATCAGAAGAGGCAAATGTGGATAGGTTGGTGTCAAAGGATCTAGTGGTTAATACGGCCACTGAAGTGACAATAAAGTCACCTGATGAGGTGGGAAAATTTAATAAATCTCCTTCCTTTACTCCTGGTGAGAAGGATCTCGCTATAAGCAGCATGGCTAATTCCTTAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGGAGAGAAGTACAATGCGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTTAGGCCAAACAAATCAGCTTTCAATAATACACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCTCCTAGCACGCTTGATACGTGCTCAGTAACTGTTGATACTGATTTGGGTTCCATAGCAGAAAAATCTGAGAACCAGATGCCAGAAAATGCGCAGCATCATGAGAGTAAAGAAGAAGAGAAAGGGTCTTCTGTCTCTAGTAGCACAACTTTAGGTATTGAAGTAAGTGCAAGTGTAGCAACCACAGAGTCTAGTAGGCCTGGTACATCTCTCAACTGCTGTAACAGGAACAGACCAACTATTATGCCATCCAATGAGAGATCCAGATCGAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTATTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTCAGTGGATCAAGTCGTAGTGGAGTTAGGCCTCACATGTCAAAGGACTTGAAATGGGAAGCTATCCACCAAATTCAGGATCAACATAAATGCCTAGGTCTGAGAAACTTCAAGCTGCTAAGGAGACTTGGTCTTGGGGACATTGGGACTGTGTATCTCTCTGAGCTATGCGATTCAAGCTGTCTATTCGCTATTAAAGTGATGGACAAGGAGTTCTTGGCAAGCAGAAAAAAAATACTTCGGGCACAAACTGAGAGAGAGATACTGCAAATGCTCGACCACCCATTTCTCCCTACATTATATGCTCATTTTGAGACGGATAAGCACTCATGCTTGGTTATGGACTACTGTCCAGGTGGAGATCTCCATGTGCTGCGACAGAAGCAACCATGCAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAATACTTACACATGCTGGGAGTTGTTTACCGAGACCTGAAACCCGAAAATGTTCTGGTCCGAGAAGATGGGCACATAATGCTCACAGATTTTGATTTGTCCCTTAGATGTGCTGTTAATCCTACGCTGCTTCAATCATCATCTCCCGTTGTGGAATCCACTAAGCGGACGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCATGGCAGGTCTCATGCTTCACTCCCAAAGTTTTATCTTCTCCATACAAATCTCGAAGAACGAAAACAGATCATCAGGCTAGTCTATTACCGCAGCTTATAGTCGAACCAACTGCTGCGCGTTCCAATTCATTTGTAGGTACCCACGAATACCTTGCCCCTGAGATTGTCAAGGGTGATGGCCATGGGAGTGCTGTCGATTGGTGGACTTACGGGATTTTTCTGTTTGAGCTACTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAACGAGGACACATTAGCAAACATAGTATCCCAAACTCTCAAGTTCCCCGATAGCCCCATAGTTAGTTTTCATGCCAGAGATCTGATCAGATGTCTGCTGGCAAAGGAGCCCGAAAACCGATTAGGCTCAACAAAAGGGGCTATCGAGATTAAGCAGCACCCGTTTTTTGAAGGCCTCAATTGGGCTCTAATACGTTGTGCAGTTCCACCTGAGCTTCCCAAGTTTTTCGACGGTGGAACTGGTGCAATGCTAATGGATTCTGGGGAGAACACGAAGCGTAGAGATCTCGAAAATTTGGAAGCGGATGCACCAATCTTTGACCTGTTTTAG 2571 43.52 MTTLASTSEIVESTEEFDSEKAGTSYMLDVGKRFSIEDDINRLFQAIDIRTLRKRSGQQRDVDKDALRKSAMKRPIRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAATKRLTRSVGSPRISEAGTIKRLYRAVVVEANGSGVPVNESKANLVEISIVSERIMSTFQNKMPELLHKTEADISNQGAESSSLKDTGVSEEANVDRLVSKDLVVNTATEVTIKSPDEVGKFNKSPSFTPGEKDLAISSMANSLDLTKNSVPEKEERSTMRCLSSLSSSGSVVRPNKSAFNNTRFIKPIFRTKNFVKKKAKLEPNSSPSTLDTCSVTVDTDLGSIAEKSENQMPENAQHHESKEEEKGSSVSSSTTLGIEVSASVATTESSRPGTSLNCCNRNRPTIMPSNERSRSREKGMFSQSSKSSIGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHQIQDQHKCLGLRNFKLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPCKSFSEHAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSSPYKSRRTKTDHQASLLPQLIVEPTAARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDSPIVSFHARDLIRCLLAKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCAVPPELPKFFDGGTGAMLMDSGENTKRRDLENLEADAPIFDLF 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46074575 46079136 - Maker00001485 Lcy8g1981 640873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1981 856 FunFam serine/threonine-protein kinase D6PK-like 698 821 - -
Lcy8g1981 856 SUPERFAMILY Protein kinase-like (PK-like) 446 820 IPR011009 -
Lcy8g1981 856 FunFam serine/threonine-protein kinase D6PK-like 555 622 - -
Lcy8g1981 856 PANTHER FLIPPASE KINASE 1-RELATED 353 824 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy8g1981 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1981 856 MobiDBLite consensus disorder prediction 411 443 - -
Lcy8g1981 856 MobiDBLite consensus disorder prediction 343 358 - -
Lcy8g1981 856 ProSiteProfiles Protein kinase domain profile. 471 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1981 856 Gene3D Transferase(Phosphotransferase) domain 1 551 619 - -
Lcy8g1981 856 Gene3D Phosphorylase Kinase; domain 1 469 550 - -
Lcy8g1981 856 Pfam Protein kinase domain 472 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1981 856 Pfam Protein kinase domain 700 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1981 856 Gene3D Transferase(Phosphotransferase) domain 1 698 817 - -
Lcy8g1981 856 FunFam Serine/threonine-protein kinase D6PK-like 469 554 - -
Lcy8g1981 856 CDD STKc_phototropin_like 471 821 - -
Lcy8g1981 856 SMART serkin_6 471 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1981 856 MobiDBLite consensus disorder prediction 359 400 - -
Lcy8g1981 856 MobiDBLite consensus disorder prediction 337 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0413 Lcy-Chr4:5030181 Lcy8g1981 Lcy-Chr8:46074575 4.63E-101 dispersed
Lcy5g1341 Lcy-Chr5:31986784 Lcy8g1981 Lcy-Chr8:46074575 1.30E-179 dispersed
Lcy5g1683 Lcy-Chr5:39130588 Lcy8g1981 Lcy-Chr8:46074575 5.49E-119 dispersed
Lcy6g0693 Lcy-Chr6:6734005 Lcy8g1981 Lcy-Chr8:46074575 1.63E-101 dispersed
Lcy8g1859 Lcy-Chr8:44891114 Lcy8g1981 Lcy-Chr8:46074575 3.44E-105 dispersed
Lcy8g1981 Lcy-Chr8:46074575 Lcy8g2106 Lcy-Chr8:47250171 6.41E-72 dispersed
Lcy8g1981 Lcy-Chr8:46074575 Lcy8g1982 Lcy-Chr8:46090413 7.27E-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66150 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1981 - - - 0.0