Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1982 ATGGAGTCCTCTACCGACGATATCGCCGACGACCTCCAGAGCCTCAGCTTCAACTCCACCAATACCAACCGCAGCAACAGCTCCGGCTCCGAGACCACTCTCACCGCCTCCTCCTCCTCCTTTGTTCACATCCCTTCCATTCTCAACAAGCCTCACGCGCCTTCCTCCGACCCTTGCTGGTCTGCCGTTAACCGGATCCGATCCGAATCGTCCACTCGCCAACTCGCCTTCGCCGACCTCAAGTTCTCGCAACGTCTCGGCTCTGGCGACATTGGCTCCGTCTACCTCGCCGGCCTCAAGTCCGCCGGAGCCGACGGATGCCTGTTCGCGGCGAAGGTAATGGATAAGAAGGAACTGGCGAGTCGGAGTAAAGAAGGCCGAGCGAGGACCGAGAGGGAGATTTTGGAGTCTTTGGACCATCCGTTTCTTCCGACGCTCTATGCTAGTATCGACTCGCCGAAGTGGCTCTGTCTCTTGACTGAGTTCTGTCCCGGCGGCGACCTCCATGTTCTCCGGCAACGGCAGCCGAACAAACGCTTCGATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAGTATCTTCACATGATGGGGATCGTTTACCGTGATCTGAAGCCGGAAAATGTGCTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAAGATTCAACGTCAACCCCACAGGTTATCACTGCTAAAAATCCGACAAATGGCAACGCCCCGCCAAAGGACTATCAAATTGATGTCCCTCCTTTCACATCATCCTCTTGCATACTTCCAAACTGCATAGTCCCCGCCGTGTCATGTTTCAACCCGAAACGCAAGCGCAAGAAGAAGTCTGGCCACCGGAATGGACCCGAGTTTGTCGCTGAACCGGTTGACGTTCGGTCAATGTCGTTCGTAGGCACTCACGAATACTTGGCGCCGGAGATTGTCTCCGGTGAGGGCCATGGAAGTGCAGTGGACTGGTGGACACTCGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCCAGAGCTCTTGAGTTCCCTAAAGAACCGGCGGTCCCAGCAGCGGCGAAGGACCTTATCTCACAGTTACTGGTCAAAGATCCTGCCAGGCGGCTGGGGTCAACGACAGGGTCGTCTGCGATCAAGCACCATTCATTTTTCCAAGGGGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCTCCACCTTTTAGTAAAGAAGTTGCATCAGAAAGCTGCCCAGAGGCCCCAGTGGATTATTATTAG 1353 53.81 MESSTDDIADDLQSLSFNSTNTNRSNSSGSETTLTASSSSFVHIPSILNKPHAPSSDPCWSAVNRIRSESSTRQLAFADLKFSQRLGSGDIGSVYLAGLKSAGADGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTSTPQVITAKNPTNGNAPPKDYQIDVPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPAAAKDLISQLLVKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSKEVASESCPEAPVDYY 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46090413 46095999 + Maker00001190 Lcy8g1982 640874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1982 450 ProSiteProfiles Protein kinase domain profile. 80 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1982 450 MobiDBLite consensus disorder prediction 1 34 - -
Lcy8g1982 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1982 450 Gene3D Transferase(Phosphotransferase) domain 1 309 431 - -
Lcy8g1982 450 Gene3D Phosphorylase Kinase; domain 1 79 166 - -
Lcy8g1982 450 FunFam serine/threonine-protein kinase D6PK-like 167 234 - -
Lcy8g1982 450 Gene3D Transferase(Phosphotransferase) domain 1 167 238 - -
Lcy8g1982 450 FunFam serine/threonine-protein kinase D6PKL2 79 166 - -
Lcy8g1982 450 FunFam serine/threonine-protein kinase D6PK-like 308 431 - -
Lcy8g1982 450 PANTHER FLIPPASE KINASE 1-RELATED 24 432 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy8g1982 450 Pfam Protein kinase domain 82 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1982 450 Pfam Protein kinase domain 310 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1982 450 MobiDBLite consensus disorder prediction 8 34 - -
Lcy8g1982 450 SUPERFAMILY Protein kinase-like (PK-like) 58 439 IPR011009 -
Lcy8g1982 450 SMART serkin_6 80 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1982 Lcy-Chr8:46090413 Lcy8g2106 Lcy-Chr8:47250171 3.45E-74 dispersed
Lcy8g1981 Lcy-Chr8:46074575 Lcy8g1982 Lcy-Chr8:46090413 7.27E-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66151 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1982 K08286 - csv:101207262 835.869