Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1992 ATGGCAAGCCACAGAGTTGAAGAAACTGGTCCTTCAAGCCATCATCTTCAATACAATTCACTTCTTTATGGAATCAACAGCAACAATAATCCTTCCTCCACTTTGATCAATCACGACGGCCAAGCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACATGGAGTCGAGAATAAACTCGATCATCCCGAACCCAAACAAAGTACGTATCGCTTTTTCTCAGGCAGGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCAAGAGGAATTGGTTTGAGAGGAAGAGAAGAGAGCACAGATGAGTCAGGATCAGCTGTGAACACTCATACAATTAGGAAATCTGATGATCATCATCATCATCATCATCATAATCAATTGGAATTGGAATTGGAACCAGAATCTCCAATGAGTAAAAAGCCAAGTTCTTCTTCTTCTTCAGGCCATCAGGGCTTTATTCAGAAGCATCTTGTGCACCAGATTCAACCTGAAATGATGCTCAGTGATGTTTCAACAACTGCACTTTCACCACAACATCAGTCCCCTCAACAAAAGAGAAAAGGATGTGGATCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTGGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTTGAGAGCAGTAGAATCAAGCTTACGCAGCTCGAACAAGACATTCAACGAACACGATCCCAGGGTTTGTTTCTGGGTGCTGGCGGCAGCATTGTCAGCTCCGGAGCTGCAATATTTGATATGGAATATGCAAGGTGGTTGGAAGAGGACCACCGGCACACGGCGGAGCTGCGTGGGGGATTGGAGGCGCGTCTACCGGATGGAGAGCTGAGAATGATGGTAGACGCCTGCGTTTGCCATTACGACGAAATTTTCCGGCTGAAAGGAGAGGCTGCGAAGTCCGACGTCTTCCATCTCATCACCGGAATTTGGATGTCTCCGGCGGAGCGTTGCTTCCTTTGGATGGGCGGATTCCGGCCCTCCGATGTAATTAAGATGTTAATGTCGCAATTAGACCCGATAACAGAACAGCAAGTGATGGAAATTTACAAGCTGCAGCATTCCTCGCAGCAGGCTGAAGATGCTTTATCCCAAGGCCTCGATCAGCTCCACCAGTCTCTGACGGAGACCGTCGCCGGCGGTCCGGTCATCGACGGCATCAACCACATGGTCTTGGCCATGGATAAGCTCTCCAATCTCCAAGGCTTTGTTCATCAGGCAGACATTCTGAGACAACAAACACTTCACCAACTGCATAGGATACTCACTGTCCGGCAAGCAGCCAAATGTTTTTTGGTCATTGGTGAATATTACAGTAGATTACGAGCCCTAAGTTCCCTATGGTCCTCTCGTCCAAAGGAGTAA 1455 47.01 MASHRVEETGPSSHHLQYNSLLYGINSNNNPSSTLINHDGQAFDFGELEQAIVLQGHGVENKLDHPEPKQSTYRFFSGRPAATLEMFPSWPIKFQQTPRGIGLRGREESTDESGSAVNTHTIRKSDDHHHHHHHNQLELELEPESPMSKKPSSSSSSGHQGFIQKHLVHQIQPEMMLSDVSTTALSPQHQSPQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDIQRTRSQGLFLGAGGSIVSSGAAIFDMEYARWLEEDHRHTAELRGGLEARLPDGELRMMVDACVCHYDEIFRLKGEAAKSDVFHLITGIWMSPAERCFLWMGGFRPSDVIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHQSLTETVAGGPVIDGINHMVLAMDKLSNLQGFVHQADILRQQTLHQLHRILTVRQAAKCFLVIGEYYSRLRALSSLWSSRPKE 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46218478 46224170 + Maker00001193 Lcy8g1992 640884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1992 484 FunFam BZIP family transcription factor 211 260 - -
Lcy8g1992 484 SUPERFAMILY Leucine zipper domain 212 251 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1992 484 SMART brlzneu 208 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1992 484 Pfam bZIP transcription factor 211 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1992 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 210 254 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1992 484 ProSiteProfiles DOG1 domain profile. 273 481 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy8g1992 484 MobiDBLite consensus disorder prediction 96 161 - -
Lcy8g1992 484 Gene3D - 211 260 - -
Lcy8g1992 484 MobiDBLite consensus disorder prediction 147 161 - -
Lcy8g1992 484 MobiDBLite consensus disorder prediction 131 145 - -
Lcy8g1992 484 CDD bZIP_HBP1b-like 212 263 - -
Lcy8g1992 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 215 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1992 484 MobiDBLite consensus disorder prediction 181 211 - -
Lcy8g1992 484 Pfam Seed dormancy control 291 366 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy8g1992 484 Coils Coil 231 258 - -
Lcy8g1992 484 PANTHER TRANSCRIPTION FACTOR TGA9 153 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0092 Lcy-Chr5:940707 Lcy8g1992 Lcy-Chr8:46218478 6.25E-18 dispersed
Lcy5g0638 Lcy-Chr5:7880978 Lcy8g1992 Lcy-Chr8:46218478 7.40E-94 dispersed
Lcy5g0911 Lcy-Chr5:15586818 Lcy8g1992 Lcy-Chr8:46218478 5.86E-84 dispersed
Lcy7g0710 Lcy-Chr7:6731665 Lcy8g1992 Lcy-Chr8:46218478 5.48E-104 dispersed
Lcy8g1992 Lcy-Chr8:46218478 Lcy5g1196 Lcy-Chr5:27254294 1.66E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20586 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1992 K14431 - csv:101223216 613.609