Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1998 ATGGCGGAAGAACATAGATGCCAAGCGCCGAAGCTCTGCGTCAACAACTGCGGATTCTTCGGGAGTCCGGCGACGCGAGATCTCTGTTCGAAGTGCTACCGAGATCTGCAGTTAAACGAGCAGCAATCCTCCTCCGCGAAACTCGCGTTAAACCAAACCCTAACATCCGCCGTTTCGGCCACCGCCTCGTCCTCTTTCGCTGATGCGTCGTTGTTAAATCTCAAATCGACATCATCGGAAGCGAGCCAGTCCGTGGCGGAGAAGGCGCAGACGACGGCGGATGTGGCGGTGGCGTCGGCTCAGCAGCAGCAGCCGAGCCGATGCATGACGTGCAGGCGGCGCGTGGGATTGACGGGGTTCAAGTGCAGGTGCGGGATGGTGTTCTGTGGGACTCACCGGTACCCGGAGCAACACGGATGTGAATTTGACTTCAAGGGGATGGGGAAGGATCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGGGAGAAACTGCGGAAGATCTGA 504 58.53 MAEEHRCQAPKLCVNNCGFFGSPATRDLCSKCYRDLQLNEQQSSSAKLALNQTLTSAVSATASSSFADASLLNLKSTSSEASQSVAEKAQTTADVAVASAQQQQPSRCMTCRRRVGLTGFKCRCGMVFCGTHRYPEQHGCEFDFKGMGKDQIAKANPVVKGEKLRKI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46262538 46263041 - Maker00000547 Lcy8g1998 640890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1998 167 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy8g1998 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270(InterPro)
Lcy8g1998 167 Pfam AN1-like Zinc finger 109 144 IPR000058 GO:0008270(InterPro)
Lcy8g1998 167 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy8g1998 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Lcy8g1998 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 8 167 IPR050652 -
Lcy8g1998 167 SUPERFAMILY AN1-like Zinc finger 97 162 IPR035896 -
Lcy8g1998 167 Gene3D - 1 68 - -
Lcy8g1998 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270(InterPro)
Lcy8g1998 167 SMART A20_3 10 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy8g1998 167 Gene3D - 76 163 IPR035896 -
Lcy8g1998 167 FunFam Zinc finger AN1-type containing 6 80 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1256 Lcy-Chr1:11895814 Lcy8g1998 Lcy-Chr8:46262538 3.28E-56 dispersed
Lcy2g1205 Lcy-Chr2:12468247 Lcy8g1998 Lcy-Chr8:46262538 4.20E-44 dispersed
Lcy3g1923 Lcy-Chr3:46432411 Lcy8g1998 Lcy-Chr8:46262538 8.42E-44 dispersed
Lcy6g0232 Lcy-Chr6:2079766 Lcy8g1998 Lcy-Chr8:46262538 1.29E-28 dispersed
Lcy6g0233 Lcy-Chr6:2083858 Lcy8g1998 Lcy-Chr8:46262538 7.27E-32 dispersed
Lcy8g1998 Lcy-Chr8:46262538 Lcy8g2104 Lcy-Chr8:47226970 3.61E-39 dispersed
Lcy8g1998 Lcy-Chr8:46262538 Lcy12g1743 Lcy-Chr12:38184070 9.11E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1998 - - - 0.0