Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2016 ATGTCCGGTTCTCGAGCTCCCAACTCCTCTGGACACCCGCCTGACCAGATCATGCACTCTCTTAAGCGGCAGCTCCCCTTCTCTTCCATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAGGAAGCTGACGCTATCGTAGTCAAATCTCCTTTGCATATGTTCCTAATTTTGTTTGAAATCGTGGATCCTGTCGATCAGCAATTAAAGCGGAAGAGTGAGGTGGCAGATTATGAAGCTGAGTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAAGGAAACAAATCAAGGCTAACCAAATGTAGTAGATCGGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAACCTGATCAAACAGGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGGATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGATCAGGTGATGTGGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGGTTGTTTAACGAGTCCTTATTTCATGGTAATCCTTATTTAATTGTTAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGTCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGTGGAAGTGCCCCCAAGCTTGCCGTCAACTTCAGGGTTTAATGAAACACCTGCTACAACAGTAGGAACAGAAGATACCAGGGGAAAGGAAATTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTCAGTATCACTGACATGTGGAGAACTGAACCTGGTGTTGAGTGGAATGAACTGGATACATTTCATGAAGATTACAGTATTGCTAATGTCAGCACACCCCAAACCCAGAATCCACTTCCTAATAATGCACCTGATATGCCTTCTGCTAATCCTTCTAGCAGCTGA 1434 44.77 MSGSRAPNSSGHPPDQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAIVVKSPLHMFLILFEIVDPVDQQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIRLFNESLFHGNPYLIVRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSTSGFNETPATTVGTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELDTFHEDYSIANVSTPQTQNPLPNNAPDMPSANPSSS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46386394 46394428 - Maker00001280 Lcy8g2016 640908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2016 477 Pfam E2F/DP family winged-helix DNA-binding domain 158 221 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy8g2016 477 PANTHER TRANSCRIPTION FACTOR E2F 31 432 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lcy8g2016 477 MobiDBLite consensus disorder prediction 125 149 - -
Lcy8g2016 477 FunFam E2F transcription factor 1 150 223 - -
Lcy8g2016 477 Pfam E2F transcription factor CC-MB domain 237 336 IPR032198 GO:0046983(InterPro)
Lcy8g2016 477 SUPERFAMILY Winged helix DNA-binding domain 156 219 IPR036390 -
Lcy8g2016 477 Coils Coil 234 254 - -
Lcy8g2016 477 MobiDBLite consensus disorder prediction 349 373 - -
Lcy8g2016 477 CDD E2F_DD 232 337 IPR032198 GO:0046983(InterPro)
Lcy8g2016 477 SMART E2F_TDP_2 156 221 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy8g2016 477 MobiDBLite consensus disorder prediction 351 370 - -
Lcy8g2016 477 Gene3D - 228 337 - -
Lcy8g2016 477 SUPERFAMILY E2F-DP heterodimerization region 233 337 IPR037241 -
Lcy8g2016 477 MobiDBLite consensus disorder prediction 106 149 - -
Lcy8g2016 477 Gene3D - 150 223 IPR036388 -
Lcy8g2016 477 Coils Coil 172 192 - -
Lcy8g2016 477 MobiDBLite consensus disorder prediction 452 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2016 K06620 - - csv:101219318 820.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0622 Lcy-Chr2:5319930 Lcy8g2016 Lcy-Chr8:46386394 3.90E-08 dispersed
Lcy5g2250 Lcy-Chr5:45467885 Lcy8g2016 Lcy-Chr8:46386394 1.09E-09 dispersed
Lcy13g1920 Lcy-Chr13:38151692 Lcy8g2016 Lcy-Chr8:46386394 2.22E-63 transposed
Lcy1g1215 Lcy-Chr1:11493559 Lcy8g2016 Lcy-Chr8:46386394 2.00E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g2250 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 3.5e-107 386.0
Lcy8g2016 . 21 456 E2F-DP Transcription Factor Family AT2G36010 52.2 9.0e-110 394.8
Lcy8g2016 . 20 449 E2F-DP Transcription Factor Family AT5G22220 55.1 1.1e-104 377.9
Lcy8g2016 . 20 449 E2F-DP Transcription Factor Family AT5G22220 55.1 1.1e-104 377.9
Lcy8g2016 . 21 456 E2F-DP Transcription Factor Family AT2G36010 52.2 9.0e-110 394.8
Lcy5g2250 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 3.5e-107 386.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20591 None None None None Lcy TF