Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2016 ATGTCCGGTTCTCGAGCTCCCAACTCCTCTGGACACCCGCCTGACCAGATCATGCACTCTCTTAAGCGGCAGCTCCCCTTCTCTTCCATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAGGAAGCTGACGCTATCGTAGTCAAATCTCCTTTGCATATGTTCCTAATTTTGTTTGAAATCGTGGATCCTGTCGATCAGCAATTAAAGCGGAAGAGTGAGGTGGCAGATTATGAAGCTGAGTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAAGGAAACAAATCAAGGCTAACCAAATGTAGTAGATCGGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAACCTGATCAAACAGGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGGATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGATCAGGTGATGTGGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGGTTGTTTAACGAGTCCTTATTTCATGGTAATCCTTATTTAATTGTTAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGTCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGTGGAAGTGCCCCCAAGCTTGCCGTCAACTTCAGGGTTTAATGAAACACCTGCTACAACAGTAGGAACAGAAGATACCAGGGGAAAGGAAATTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTCAGTATCACTGACATGTGGAGAACTGAACCTGGTGTTGAGTGGAATGAACTGGATACATTTCATGAAGATTACAGTATTGCTAATGTCAGCACACCCCAAACCCAGAATCCACTTCCTAATAATGCACCTGATATGCCTTCTGCTAATCCTTCTAGCAGCTGA 1434 44.77 MSGSRAPNSSGHPPDQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAIVVKSPLHMFLILFEIVDPVDQQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIRLFNESLFHGNPYLIVRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSTSGFNETPATTVGTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELDTFHEDYSIANVSTPQTQNPLPNNAPDMPSANPSSS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46386394 46394428 - Maker00001280 Lcy8g2016 640908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2016 477 Pfam E2F/DP family winged-helix DNA-binding domain 158 221 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy8g2016 477 PANTHER TRANSCRIPTION FACTOR E2F 31 432 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lcy8g2016 477 MobiDBLite consensus disorder prediction 125 149 - -
Lcy8g2016 477 FunFam E2F transcription factor 1 150 223 - -
Lcy8g2016 477 Pfam E2F transcription factor CC-MB domain 237 336 IPR032198 GO:0046983(InterPro)
Lcy8g2016 477 SUPERFAMILY Winged helix DNA-binding domain 156 219 IPR036390 -
Lcy8g2016 477 Coils Coil 234 254 - -
Lcy8g2016 477 MobiDBLite consensus disorder prediction 349 373 - -
Lcy8g2016 477 CDD E2F_DD 232 337 IPR032198 GO:0046983(InterPro)
Lcy8g2016 477 SMART E2F_TDP_2 156 221 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy8g2016 477 MobiDBLite consensus disorder prediction 351 370 - -
Lcy8g2016 477 Gene3D - 228 337 - -
Lcy8g2016 477 SUPERFAMILY E2F-DP heterodimerization region 233 337 IPR037241 -
Lcy8g2016 477 MobiDBLite consensus disorder prediction 106 149 - -
Lcy8g2016 477 Gene3D - 150 223 IPR036388 -
Lcy8g2016 477 Coils Coil 172 192 - -
Lcy8g2016 477 MobiDBLite consensus disorder prediction 452 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0622 Lcy-Chr2:5319930 Lcy8g2016 Lcy-Chr8:46386394 3.90E-08 dispersed
Lcy5g2250 Lcy-Chr5:45467885 Lcy8g2016 Lcy-Chr8:46386394 1.09E-09 dispersed
Lcy13g1920 Lcy-Chr13:38151692 Lcy8g2016 Lcy-Chr8:46386394 2.22E-63 transposed
Lcy1g1215 Lcy-Chr1:11493559 Lcy8g2016 Lcy-Chr8:46386394 2.00E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20591 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2016 K06620 - csv:101219318 820.076