Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2020 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAATTCTGACGGAATTCACACTCTTTACCTTATGAACCCCAATTATGTACCTTACTCTGACACCCACTCACAAACGCCTCCCAATATGCTCTTTCTCAATCCTTCCGGCCACGCGCTTACTCCTTCCACTCTCCCTCACGCGCCGCCTTCAAACAACCACTTCGTCGGAATTCCTCTCCCCACCACCGACGCTTCTCGTCCCTCCTACGCTTCTCAATCCCACCACGAGATCTCAGCCCTCCACTCCGTCCCAGCTCAGCGCCTCCACTACAATCTCTGGGCTCCTATGGACCAATCCCCCCACGGAATCTCCGCCGTGTCGGCCACCACCGACTCCGCCGATTTGGGCTTCCGTCGCCCGGCGACACAGCAGGGTCTGTCCTTGAGCCTCTCCTCCCAACAGTCGCTTTATCGTACGCTATCGGCGGAGCAGGAGATTCAAGGCGGCGGCGGCGGGGGAGGTGGAGGTGGAGGTGGCGCTCCGGCTATCTCGCCGACGAGTGGGGATGAGATTAGGGTGTCGGGAAATTCGCCGACGTCGGTGTCGGTGGTGTCGAGTGGAATAACGGGGGTTCAAAGTGTGATATTGGGGTCCAAGTACTTGAAAGCGGCACAAGAACTTTTGGATGAAGTCGTTAATGTTGGCAAAGGAAACAATAAAACCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCCACCGCTGCGGTTGCTGAGCCTTCCGCCGCCTGCGCTGGCGGCGGTGAAAGTACTTCGAAGCCCGCCGCTGAGCTCAGCACTGCTCAAAGGCAGGACCTTCAGATGAAGAAAGCTAAGCTTATTGGCATGCTTGATGAGGTGGAGCAAAAGTACAGACAGTACCACCAGCAAATGCAAGCAGTGGTTTGTTCGTTCGAGCAGGCGGCAGGGTTGGGGTCGGCCAAGTCCTACGCTTCGCTTGCTTTACAAACAATTTCAAAGCAATTTCGGTGCTTGAAAGATGCAATATGTACACAAATTAAAGCCACGGGGAAAAGCTTAGGCGAAGAGGATTGGTTGGGTGGCAAAATTGAAGGGTCGAGATTGAGATACGTGGACCATCATCTACGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACACAACACTTGGAGACCCCAGAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTCCTTCACCCATATCCGAAGGATTCAGACAAGATTATTCTTGCGAAGCAAACGGGACTCACAAGGAGCCAAGTCTCTAATTGGTTTATAAACGCAAGAGTTCGTCTATGGAAGCCAATGGTGGAAGAAATGTACTTGGAAGAAATCAAAGACCAAGAACAAAACGGAGATTCCCACGATATGAACAGAAACAACAAAAACGAACCCAACAAACAACGTGGTGGAGCTGGAGGAGATCAGAACAACAATGCATCAGAATCTTTTAAACTAAACCACCAGATGAACGATCCACAATCCAAGACAGAGAATTTAAACAACAACAACAACAATTCTCTCACCGATCACGTTTCCAATTCTTCAATGTCATCATCCTCGATGTTGGGATCCTTACAAACTCACTCAGGCTTCAACCTCGTACGACCATCCTCCGACATCCTCTCGAGTCCCAAAAAACCAAGAACCACAAACAACCTCGAAACCCCATCCACAAAAACCATGCTTTTAAGAGACATTAATGACACGAAACACCTTCAGATGACAGAGATGAACATGAACAACAACAACAATCATGGCGGCGGATTTGGTTCCTACCCAATTGGTGAAATTGGATCGAGGTTCAATTCTGAGCTTTTGACGCCAAGATTCCATGGAAATGGCGTCTCTCTCACTCTTGGCCTTCCCCATTCAGATAATCTCTCTCTTTCAGGAACCCAACAAAATTACCTCTCCAACCGAAACCTTCAGTTGGGGAGAAGGGTTGATATCACCAACGCCGGACCTGATTTCTCCGACGTCAATCCCGCCCCGCCGCCTCATTCCGTATCGACTGGCTACGACGGCGTCGAAATGCAAACGACGAAAAGGTTTGCTGCCCAATTATTGCCTGATTTTGTCGCTTGA 2151 49.93 MATYFHGGSEIQANSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSGHALTPSTLPHAPPSNNHFVGIPLPTTDASRPSYASQSHHEISALHSVPAQRLHYNLWAPMDQSPHGISAVSATTDSADLGFRRPATQQGLSLSLSSQQSLYRTLSAEQEIQGGGGGGGGGGGGAPAISPTSGDEIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVNVGKGNNKTDKGDGTKDKMKMKKESTAAVAEPSAACAGGGESTSKPAAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVVCSFEQAAGLGSAKSYASLALQTISKQFRCLKDAICTQIKATGKSLGEEDWLGGKIEGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGDSHDMNRNNKNEPNKQRGGAGGDQNNNASESFKLNHQMNDPQSKTENLNNNNNNSLTDHVSNSSMSSSSMLGSLQTHSGFNLVRPSSDILSSPKKPRTTNNLETPSTKTMLLRDINDTKHLQMTEMNMNNNNNHGGGFGSYPIGEIGSRFNSELLTPRFHGNGVSLTLGLPHSDNLSLSGTQQNYLSNRNLQLGRRVDITNAGPDFSDVNPAPPPHSVSTGYDGVEMQTTKRFAAQLLPDFVA 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46432224 46436318 + Maker00000735 Lcy8g2020 640912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2020 716 SMART prehox3 202 348 IPR006563 -
Lcy8g2020 716 SUPERFAMILY Homeodomain-like 397 462 IPR009057 -
Lcy8g2020 716 MobiDBLite consensus disorder prediction 485 577 - -
Lcy8g2020 716 Gene3D - 391 470 - -
Lcy8g2020 716 FunFam BEL1-like homeodomain protein 9 399 461 - -
Lcy8g2020 716 CDD homeodomain 396 457 IPR001356 GO:0003677(InterPro)
Lcy8g2020 716 SMART HOX_1 396 460 IPR001356 GO:0003677(InterPro)
Lcy8g2020 716 MobiDBLite consensus disorder prediction 469 484 - -
Lcy8g2020 716 MobiDBLite consensus disorder prediction 158 192 - -
Lcy8g2020 716 Pfam Homeobox KN domain 413 452 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy8g2020 716 MobiDBLite consensus disorder prediction 469 577 - -
Lcy8g2020 716 Coils Coil 280 307 - -
Lcy8g2020 716 ProSiteProfiles 'Homeobox' domain profile. 393 456 IPR001356 GO:0003677(InterPro)
Lcy8g2020 716 Pfam Associated with HOX 207 346 IPR006563 -
Lcy8g2020 716 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 146 493 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1487 Lcy-Chr1:14543951 Lcy8g2020 Lcy-Chr8:46432224 1.15E-55 dispersed
Lcy5g0165 Lcy-Chr5:1667752 Lcy8g2020 Lcy-Chr8:46432224 1.19E-53 dispersed
Lcy5g2617 Lcy-Chr5:48927227 Lcy8g2020 Lcy-Chr8:46432224 9.86E-175 dispersed
Lcy12g1625 Lcy-Chr12:36543485 Lcy8g2020 Lcy-Chr8:46432224 5.09E-70 transposed
Lcy3g2052 Lcy-Chr3:47502719 Lcy8g2020 Lcy-Chr8:46432224 1.70E-75 transposed
Lcy8g1151 Lcy-Chr8:37816424 Lcy8g2020 Lcy-Chr8:46432224 6.96E-89 transposed
Lcy5g0494 Lcy-Chr5:5337893 Lcy8g2020 Lcy-Chr8:46432224 9.86E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20592 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2020 - - - 0.0