Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g2029 | ATGTCGATTCGAAGTTCTCCACATTACCGAAAGCGAGCGGTGGAAATCTCTCTCGTGGTCTATTGTTCTCCCTCGGCCAGCTTGATTGAACGGCGAACTTACTGTAGAGTGGTGTTTTTGCCTTCTGCACTCCGCCGTGGACTTCACAATGGTGAGTTAGGGTTTTTGCCGGATATTAGAAAATGGTTCATGAAACCACACGATAAAGACAACGGCAGTGCGTCAAAGCAAGCAAAACCTGCTCCAAGCAACTTAGAGAAACCCGCTTCAGCTGAACTACAGTTCGGAAAAACAGAGGACACAAGAGACCTTATAATGGAAATTCAGGATGCTGATGATTGGAGTCCTGTTATCGAGCAGGAGACACCAAATCTGAAGCTATTTGCTGGAGAATGGGATATCTTGCTGAGAAGACAGGTCGTAGATGGGGTGAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAAAAGAAACAGAGGAACTCCCGAATAAACGGAAGTCTCCACAGGATGCTAAGGAATCACCGGCCAAACGAAAGTCTCCACAGGATGCTAAGGAATCACCAGCCAAAAGAAAGTCTCAAAAGGATAGTGAGGAATCACCGAAAGCTCCAGCTTTAAAAAAATCAAACAAAATTGGTGACAATGATGATGATGACGTTTTTACTAGTTCTAGAAAGAACTTGTCCGATGTCACTCCCAACAAGAAGTTGAAGAGTGGTTCTGGAAAGGGAATTCCACAGAAACCTGTAGAAACTGAAGAGAGTGATGATGAGGAAACTAAGGGTACCGAGCCTTCTCTAAAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACTGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCACCTGACTGTTTGGCTGGTTTAACTTTTGTAATTAGTGGAACCCTCGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAATGCCATGGTGGTCGAGTAACTGGATCTGTCAGCAAAAAAACAGTTAATTCATTATTATACCATTTTTACTTATCCAAAAAAAGAAAGAAGTCCTTGCACGCCTTTTATGATTTGAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTTGATATGATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCAGGATACTAAAAAATCTTTGGTTAAGTCTGTGGAATCTCCAACAGAGAACATTTCCCAGAAAGTGCAAGCAAAGACACGCAAAGATTTGACTGCTGGTGCTTCACCTGCTAAGCAGAAAAGCCAAACAATTGAATCTTCATCCCTAACATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGCAATCAGTCACTGGTATCTCAATCTCTTGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGCAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGCGATAATCGGGGTAAAGCAGATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCTTTGCATTTCAAAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGTACAGCCAGAAGCTAAAGAGCCTTGTGAACTATTGTCTGATTCTCAGCTATAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTGGCAGAAAGAGTTAATGGGGATATGCGTATGGCATTAAATCAGTTGCAGTACCTGAGTTTGTCAATGTCAGTTATTAAATATGACGATATTCGTCAACGACTTATGAGCAGTATGAAAGACGAAGACATCTCACCATTCACCGCTGTTGACAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGAATAGACCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATGTTAATTATAGGCCAAGCTCTGTTAGTAAGGATGAAAGTGGGATAAAGCGCATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTGTAATCCCAGCTTCACTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGGATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGGGAGTCCTGCTCAGGGAGGGAACACATACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTGCACACGCTGCCCAAGGATGAAGCTGTTAAAATGGTGGTTGAATTTATGAGTCTATATTCGATCAGTCAGGAGGATTTTGATACTGTTGTGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAGCTGAGGATACAATTGAGGGCGCTGGTGGAGACACATTGGCTGAAAGTGACGATGAGAACTCTTTGGACAACGAGGGCGCTGAAGACTCCACAAACGGTGAGAAGCTGCAACTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAGTTGGATTTGAAGGCCGTGGAAAAGTCGAGCGCCAAGAAATCCGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGGCGTCAGAGAAGAAAGGTGGGCGAGGATCAGGATCTGCCACGAAGAGGAAAAGATGA | 3339 | 43.16 | MSIRSSPHYRKRAVEISLVVYCSPSASLIERRTYCRVVFLPSALRRGLHNGELGFLPDIRKWFMKPHDKDNGSASKQAKPAPSNLEKPASAELQFGKTEDTRDLIMEIQDADDWSPVIEQETPNLKLFAGEWDILLRRQVVDGVSGGESTGRRITSKYFASEKQKSKDTKETEELPNKRKSPQDAKESPAKRKSPQDAKESPAKRKSQKDSEESPKAPALKKSNKIGDNDDDDVFTSSRKNLSDVTPNKKLKSGSGKGIPQKPVETEESDDEETKGTEPSLKPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKCHGGRVTGSVSKKTVNSLLYHFYLSKKRKKSLHAFYDLNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGTKAPPRQDTKKSLVKSVESPTENISQKVQAKTRKDLTAGASPAKQKSQTIESSSLTWTEKYRPKVPNDIIGNQSLVSQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSKMLGYEAIEVNASDNRGKADAKIQKGISGSNANSIKELISNESLHFKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLILSYRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLMSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYVNYRPSSVSKDESGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSGWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHIRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVVELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPAEDTIEGAGGDTLAESDDENSLDNEGAEDSTNGEKLQLELQSLNKKGMQVQLDLKAVEKSSAKKSGGRGRGGGSQASEKKGGRGSGSATKRKR | 1112 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 46537537 | 46551993 | + | Maker00000691 | Lcy8g2029 | 640921 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g2029 | 1112 | PIRSF | RFC1 | 57 | 389 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Lcy8g2029 | 1112 | PIRSF | RFC1 | 395 | 1088 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Lcy8g2029 | 1112 | ProSiteProfiles | BRCT domain profile. | 330 | 373 | IPR001357 | - | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 144 | 330 | - | - | |
| Lcy8g2029 | 1112 | FunFam | Replication factor C subunit 1 | 490 | 683 | - | - | |
| Lcy8g2029 | 1112 | Gene3D | - | 490 | 683 | IPR027417 | - | |
| Lcy8g2029 | 1112 | Pfam | Replication factor RFC1 C terminal domain | 824 | 986 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 434 | 488 | - | - | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 314 | 329 | - | - | |
| Lcy8g2029 | 1112 | SUPERFAMILY | BRCT domain | 330 | 433 | IPR036420 | - | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 451 | 467 | - | - | |
| Lcy8g2029 | 1112 | FunFam | Replication factor C subunit 1 | 756 | 865 | - | - | |
| Lcy8g2029 | 1112 | Gene3D | - | 756 | 866 | - | - | |
| Lcy8g2029 | 1112 | CDD | AAA | 544 | 647 | - | - | |
| Lcy8g2029 | 1112 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 490 | 744 | IPR027417 | - | |
| Lcy8g2029 | 1112 | Pfam | ATPase family associated with various cellular activities (AAA) | 551 | 663 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 158 | 238 | - | - | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 1024 | 1054 | - | - | |
| Lcy8g2029 | 1112 | Gene3D | BRCT domain | 307 | 433 | IPR036420 | - | |
| Lcy8g2029 | 1112 | SMART | BRCT_7 | 332 | 434 | IPR001357 | - | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 67 | 98 | - | - | |
| Lcy8g2029 | 1112 | Pfam | BRCA1 C Terminus (BRCT) domain | 332 | 431 | IPR001357 | - | |
| Lcy8g2029 | 1112 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 174 | 1081 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Lcy8g2029 | 1112 | CDD | HLD_clamp_RFC | 684 | 742 | IPR047854 | - | |
| Lcy8g2029 | 1112 | FunFam | Replication factor C subunit 1 | 684 | 755 | - | - | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 1070 | 1112 | - | - | |
| Lcy8g2029 | 1112 | SMART | AAA_5 | 547 | 685 | IPR003593 | GO:0016887(InterPro) | |
| Lcy8g2029 | 1112 | Gene3D | - | 684 | 754 | - | - | |
| Lcy8g2029 | 1112 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 755 | 900 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
| Lcy8g2029 | 1112 | MobiDBLite | consensus disorder prediction | 263 | 279 | - | - | |
| Lcy8g2029 | 1112 | CDD | BRCT_RFC1 | 330 | 432 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1758 | Lcy-Chr11:41377199 | Lcy8g2029 | Lcy-Chr8:46537537 | 3.45E-10 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g2029 | K10754 | - | csv:101204361 | 1576.99 |