Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2036 GAAAAACCGATCAATTCACAGAGCAAAAACAACGAGAACGATCCTGAAAAGAGAGGAGGAAGAAGAAGAAAAGTGTATGTGATCGACGAAGTGGCGACAAGAAAAACCGAAGGAGAGACGCTCAACAGTCGTCTCCAATTTTTTCTTTTTTCTCTGTTTCCAAGTCTTGAAGGAGTTTTCGGCAGTAAGGAAGAACTAATGGCGGCTCGAGCTGTTGTTCCTCAGCAACAACTACGAATCAGAGGTGAAGGTAAGCCGAAGATGGTAGCGGCTGAAGGAAGAACAAGGCGTGTTCTTCAAGATATAGGCAATCTGGTGCCTGATCGAGCCGCAGTAGAAGGGAAACCTGGACCTCAACCTGCCGAGAAGAACAAGAGAACAATCACCCAAAAGCTGGATGGGGTGGAAAAGGGAGGCGATGTGACGAAGGCTGCAGTAACTGAGAAGTGCAAAGCTGAGAAACCTAAGACCGTACTCAGCTCTGCCGACAAGAGACATATAATCAATATCAGCGACAGTAAATCAAGGGATAAGAATAAGAGGACTCTGACTTCAACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAATAATCCACTGGATTCAGTAGCTAACATTGATGGAGCAGATGCTAACAATGAATTGGCAGTAGTTGAATACATCGACGACATGTACAAGTTTTACAAGCTTGCAGAAGATGAGAGCCGAGTATCAGATTACATGGGATCACAGCCAGATTTGAATGCTAAGATGAGATCCATCCTCATAGATTGGTTGATAGAAGTTCATCGCAAGTTTGAACTGATGCCAGAAACCCTTTACCTCGCTGTAAACATTGTAGACCGATTCCTTTCCTTGAAGACTGTACCAAGGAGGGAACTTCAATTGGTAGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTCGTGAGTATATCTGCAAATACTTATCAGAGAGAACAGATTTTGGTGATGGAGAAAGTAATCTTGGGCAGGCTGGAATGGCTTCTCACAGTTCCTACTCCTTACGTTTTTCTTGTTCGATATGTAAAGGCTTCTGAGCCGTCTGATGAGGAGGTGGGTTGTGAGATTTCTCAACTCTTTGTTCTTTACTTTGTCACTTCGATTAACCTGCATGATAAGTTTGTTGTGATTGAAGAAATGTTAAGAGTATTGAACAACCCTTCAGCGATTGCTTCAGCGGCTGTTTACGCTGCACGATGCACACTTGAAAAGAGCCCTCTCTGGACAGCGACTTTGCAGCACCATACAGGCTACGTGGAAGATGAGGAATGTGCAGAACTCCTTGTGAACTTGCACCGTGGAGCTGTAGATTGCAAGCTCAAGGCTGTGTATAGAAAATATACGAGTCCAGATCGCAGTGCTGTTGCTCTTTTTCCTCCAGCTATAAAAGTCTAG 1455 44.54 EKPINSQSKNNENDPEKRGGRRRKVYVIDEVATRKTEGETLNSRLQFFLFSLFPSLEGVFGSKEELMAARAVVPQQQLRIRGEGKPKMVAAEGRTRRVLQDIGNLVPDRAAVEGKPGPQPAEKNKRTITQKLDGVEKGGDVTKAAVTEKCKAEKPKTVLSSADKRHIINISDSKSRDKNKRTLTSTLSARSKAACGLTNNPLDSVANIDGADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGSQPDLNAKMRSILIDWLIEVHRKFELMPETLYLAVNIVDRFLSLKTVPRRELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDEEVGCEISQLFVLYFVTSINLHDKFVVIEEMLRVLNNPSAIASAAVYAARCTLEKSPLWTATLQHHTGYVEDEECAELLVNLHRGAVDCKLKAVYRKYTSPDRSAVALFPPAIKV 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46611979 46614803 + Maker00000966 Lcy8g2036 640928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2036 484 SMART cyclin_7 356 453 IPR013763 -
Lcy8g2036 484 SMART cyclin_7 259 343 IPR013763 -
Lcy8g2036 484 SMART Cyclin_C_2 352 481 IPR004367 -
Lcy8g2036 484 Gene3D - 239 350 - -
Lcy8g2036 484 PANTHER CYCLINS 206 468 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy8g2036 484 CDD CYCLIN_AtCycB-like_rpt1 203 347 - -
Lcy8g2036 484 Gene3D - 225 476 - -
Lcy8g2036 484 MobiDBLite consensus disorder prediction 1 22 - -
Lcy8g2036 484 SUPERFAMILY Cyclin-like 214 347 IPR036915 -
Lcy8g2036 484 Pfam Cyclin, C-terminal domain 352 480 IPR004367 -
Lcy8g2036 484 Pfam Cyclin, N-terminal domain 225 349 IPR006671 -
Lcy8g2036 484 FunFam G2/mitotic-specific cyclin 238 350 - -
Lcy8g2036 484 SUPERFAMILY Cyclin-like 351 480 IPR036915 -
Lcy8g2036 484 ProSitePatterns Cyclins signature. 254 285 IPR048258 -
Lcy8g2036 484 PIRSF Cyclin_A_B_D_E 60 484 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1775 Lcy-Chr1:18946357 Lcy8g2036 Lcy-Chr8:46611979 3.30E-120 dispersed
Lcy8g2036 Lcy-Chr8:46611979 Lcy9g1815 Lcy-Chr9:43278052 1.10E-43 dispersed
Lcy8g2036 Lcy-Chr8:46611979 Lcy9g2319 Lcy-Chr9:47549657 3.98E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2036 K21777 - csv:101222873 620.542