Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2037 ATGAAATATTACGCTCTCACAAGATTGGTGATTTTTGTCTCAGGTTTTGCAGCCATCATCTCCGCAGCTTCGCCGCCAGTTCCGTCGGACAAGTCGCAACTAAACAAATGGTTTTCCGAAAACGTGAAGCCCTTAGCCCAGCGGAAGGCCGGGCTCGATCCAGCCCTCCTGGCGGCGGAACAAAACGCCACCGTCGTGAAAGTGAGGGCCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATCGCCAGCGTTCCAGCAAATAACAAGAATCGCGTCGTGATTTGGATCGGAGGAGGCGTTTACAAAGAGAAGCTCAAGATCGATAGAAACAAGCCATTCGTTACTCTCTACGGCTCTCCTAATAATATGCCTAATTTGACATTCAACGGCGACGCCGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTAGAGTCTAATTACTTCACCGCTGCCAATCTCGTCATCGAGAATTCATCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAGGCCGTGGCAGCCAGATTTTTTGGGGATAAAGCCGCCATTTACAATTGCAAATTCATTGGATTTCAAGACACTCTTTGCGACGACGACGGTTTCCATCTCTACAAGGACTGCTTCATTCAAGGGACTATGGATTTCATTTTCGGAAAAGGAACCTCCCTTTATTTGAACACTCAGTTGGATGTGGCGGGGAATGGGAGATTGGCAGTGATCGCAGCCCATTCAAGAGAACAGGAAGCCCACCCAAGTGGATATGTGTTCGTGCATTGTAGCATTACTGGAACCGGTGGCAAGAACACTTACTTGGGAAGAGCTTGGATGGCCAGGTCCAGAACCATCTACGCTTACACCACAATGGCTGACATCATCCATCCCGAAGGCTGGAACGACATGAAGCATCCCGGTTACGATGCCACGGTTTTGTATGGAGAATACAAGTGTTCGGGGCCGGGAGCGGTGTCGAGCGGACGTGTAAAATGGGGCAAGCAGTTGACTGATGCGGAAGTGAAGCCGTACCTCACTCTTGATTACGTGGAGAGTGAGAAGTGGCTGCTTCCTCCTCCCAACCTTAAGGCTTAG 1098 50.09 MKYYALTRLVIFVSGFAAIISAASPPVPSDKSQLNKWFSENVKPLAQRKAGLDPALLAAEQNATVVKVRADGSGDFKTITEAIASVPANNKNRVVIWIGGGVYKEKLKIDRNKPFVTLYGSPNNMPNLTFNGDAAKYGTVYSATLIVESNYFTAANLVIENSSPRPDGKRKGAQAVAARFFGDKAAIYNCKFIGFQDTLCDDDGFHLYKDCFIQGTMDFIFGKGTSLYLNTQLDVAGNGRLAVIAAHSREQEAHPSGYVFVHCSITGTGGKNTYLGRAWMARSRTIYAYTTMADIIHPEGWNDMKHPGYDATVLYGEYKCSGPGAVSSGRVKWGKQLTDAEVKPYLTLDYVESEKWLLPPPNLKA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46622453 46633211 - Maker00001157 Lcy8g2037 640929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2037 365 Gene3D - 59 359 IPR012334 -
Lcy8g2037 365 FunFam Pectinesterase 61 359 - -
Lcy8g2037 365 SUPERFAMILY Pectin lyase-like 62 357 IPR011050 -
Lcy8g2037 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 357 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lcy8g2037 365 Pfam Pectinesterase 66 351 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1777 Lcy-Chr4:43837242 Lcy8g2037 Lcy-Chr8:46622453 6.34E-56 dispersed
Lcy6g1084 Lcy-Chr6:12130314 Lcy8g2037 Lcy-Chr8:46622453 3.60E-258 dispersed
Lcy8g2037 Lcy-Chr8:46622453 Lcy8g2038 Lcy-Chr8:46635026 1.42E-235 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2037 K01051 - csv:101205095 593.964