Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2038 ATGCAAATATTCATCCAATCCAAAAAGAAAAAAGAAAAAAAAAAAAGAGAAAAAAAAAAAAAGAAAAATTACAAACTAGAAAATATGAAATATTGCCTTGATGCTGTCGCTGTAACAAGATTGGTGATTTTTGTGTCAGCTTTTGCAGCCATCTTTGCAGCTTCACCACCAGTTCCGTCGGACAAGTCGCAACTAAACAAATGGTTTTCCGAAAACGTGAAGCCCTTTGCCGATCGCAAGGCGGAGCTTGATCCGGCCCTCGTCGCCGCCGAAGAAAACGCCACCGTCGTCAAAGTAATGGCCGACGGAAGTGGAGATTTCAAGACTATCACCGAAGCCATTGCCAGCGTTCCAGCAGATAACAAGAATCGCGTTGTGATTTGGATCGGAGGAGGCGTTTATAAAGAGAAGCTCAAGATCGATAGAAACAAGCCATTCGTTACTCTATATGGCTCTCCTAATAACATGCCAAATTTGACATTCGACGGCGATGCCGCCAAATACGGCACCGTTTACAGTGCAACTTTGATCGTCGAGTCCGATTATTTCACCGCTGCCAATCTCGTCATCGAGAATTCATCACCAAGGCCAGATGGGGTGAGAAAAGGAGCACAGGCATTAGCAGCCAGACTATTGGGGAATAAAGCGGCTGTTTACAATTGCAAATTCATTGGGTTTCAAGACACTCTTTGCGACGACGACGGTTTGCATCTCTACAAGGATTGCTTCATTCAAGGGAATGTGGACTTCATTTTCGGAAAAGGAACATCCCTTTATTTGAACACTCAATTGGATGTGGTGGGAGACGGGGGATTGGCGGTGATCGCAGCGCATTCGAGAGAACAAGAATCAGATCCAAGTGGATATTCATTTGTGCATAGCAGCATCACAGGAACTGGCGGCAAAAACACTTACTTGGGAAGGGCTTGGATGGCCAGGTCTAGAACTGTCTTCGCCTACACCACAATGGCCGACATTATTCACCCTGCAGGCTGGGACGACATGAAGCATCCCGGTTACGATAATACGGTTTTGTTCGGAGAATACAAGTGTTCGGGGCCGGGAGCCGAGCCGAGCGGGCGTGTAAAATACGCCAAGCAGTTGACTGATGTGGAAGTGAAGCCGTTCGTGAGCCTTGGGTACGTGCAAAGTGACAAGTGGTTGCTTCCTCCTCCTAATCCTCAAGCTTAA 1191 46.68 MQIFIQSKKKKEKKKREKKKKKNYKLENMKYCLDAVAVTRLVIFVSAFAAIFAASPPVPSDKSQLNKWFSENVKPFADRKAELDPALVAAEENATVVKVMADGSGDFKTITEAIASVPADNKNRVVIWIGGGVYKEKLKIDRNKPFVTLYGSPNNMPNLTFDGDAAKYGTVYSATLIVESDYFTAANLVIENSSPRPDGVRKGAQALAARLLGNKAAVYNCKFIGFQDTLCDDDGLHLYKDCFIQGNVDFIFGKGTSLYLNTQLDVVGDGGLAVIAAHSREQESDPSGYSFVHSSITGTGGKNTYLGRAWMARSRTVFAYTTMADIIHPAGWDDMKHPGYDNTVLFGEYKCSGPGAEPSGRVKYAKQLTDVEVKPFVSLGYVQSDKWLLPPPNPQA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46635026 46637541 + Maker00001050 Lcy8g2038 640930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2038 396 SUPERFAMILY Pectin lyase-like 94 389 IPR011050 -
Lcy8g2038 396 Gene3D - 91 391 IPR012334 -
Lcy8g2038 396 FunFam Pectinesterase 92 390 - -
Lcy8g2038 396 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 60 388 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lcy8g2038 396 Coils Coil 7 29 - -
Lcy8g2038 396 Pfam Pectinesterase 97 383 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g2037 Lcy-Chr8:46622453 Lcy8g2038 Lcy-Chr8:46635026 1.42E-235 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2038 K01051 - csv:101205095 615.535