Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2041 ATGAGTCGAGGCCGACCATGGCCCACAGGGGTTGGACCGAGCTTAACCCAACCCCTTTGCTTTGCCTCTCAAGAATTGATGGAACAGAAAAAGTACAGAGCCGATCTTCTTCCATCCGCCTTCATTGTCGTCTTCTTTTTCCTCTCTCTTTCCGGCCGATCTGTCGTTCACGCCTACAAAAACTACACCGTCGGAGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTACCAGAAATGGACCGTCGGCAAGAACTTCAGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTGGTGCAAACATACAATTTTACCACGTACAAGCTCTGTGACTACGACGACGCATCGGAAAACGACACGACGGAATGGTCCGCCGCCGACCCGTCGGCGACCACTCCGTACGCCGTGACGGTGCCCGTCCCACTGGTGAAAGAAGGGATGAACTATTTCTTCTCCGGCCACTACGACGGAGAGCAGTGCCAAAATGGTCAACAATTCAAAATTAATGTCGCTCACGGACAGGGCCTCCCAAAGAGCATGGGAGATTCTTCCGGCGAAGCTCCGGCGCCGGTGGTTCCCGACTCCGGCGACCAAACGGAATCTGCACCCGACACTATCGTTCCTTCCAGCTTCGACAATCCCAAAAACGACGTCGCTGATACTGATAGCGACAAGAAGGAAGCTTCAGGCTCCGTTTCGCTATTATCGCTTCACTTCAAGTTTAATGAGTTTCTCTTCTTGTTAGTTGGTATTGTCTGCATATTTATTTTCTCTGAGTGA 804 51.12 MSRGRPWPTGVGPSLTQPLCFASQELMEQKKYRADLLPSAFIVVFFFLSLSGRSVVHAYKNYTVGDSLGWFDKLEKPAVDYQKWTVGKNFSLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASENDTTEWSAADPSATTPYAVTVPVPLVKEGMNYFFSGHYDGEQCQNGQQFKINVAHGQGLPKSMGDSSGEAPAPVVPDSGDQTESAPDTIVPSSFDNPKNDVADTDSDKKEASGSVSLLSLHFKFNEFLFLLVGIVCIFIFSE 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46647914 46651937 + Maker00001219 Lcy8g2041 640933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2041 267 Gene3D - 59 183 IPR008972 -
Lcy8g2041 267 FunFam Early nodulin-like protein 18 59 181 - -
Lcy8g2041 267 PANTHER BLUE COPPER PROTEIN 46 196 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lcy8g2041 267 MobiDBLite consensus disorder prediction 206 224 - -
Lcy8g2041 267 SUPERFAMILY Cupredoxins 60 178 IPR008972 -
Lcy8g2041 267 MobiDBLite consensus disorder prediction 185 233 - -
Lcy8g2041 267 Pfam Plastocyanin-like domain 72 172 IPR003245 GO:0009055(InterPro)
Lcy8g2041 267 ProSiteProfiles Phytocyanin domain profile. 60 180 IPR003245 GO:0009055(InterPro)
Lcy8g2041 267 CDD Phytocyanin 60 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2041 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy8g2041 . 48 263 Phytocyanin Superfamily AT1G08500 54.1 4.6e-56 215.3
Lcy2g1118 . 29 144 Phytocyanin Superfamily AT2G27035 57.8 6.9e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26