Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2090 ATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACGAAATATGCAGCAGATGAGTAGTTATTCTGAGCCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGCCAGCAGCAGGAGGAAATGTGTCCAATTCACCATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCGAATGATGATTTGAATGAAGATGATGATGACGACACCACAAAAGATTCACAAGCTGCAAGTTATGGGCAAGGACAGCAGAATAATCAGCATGCTGTCTCTACTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCACCAACTCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCTATGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAACCAGTTTTTGTGAATGCCAAGCAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGCTTTGCCAAGAAAAATGAAGTTAACTCTTCGAGCTCTACTATGAAGGCTAAGGAATCCGGTTCTGGTCAAGCTATCTCGTCGCAGTCTGCTAGTTCATCTGGTTCTGAAGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCCATGGTCAACAAGAAGCAAGGGTCCAGTTGCATGAGGCATATGAAGCTCGTAGTTATGTGAATGGCAGTAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCATCATTTGCTTTGCGCTCTGGTGAGAGAGGTGAAGATGGAGACTGTTCAGGACAGCAACGAGGAAGTATCTCAGATAATCAGGCGGCACAGAGGCGTCTTGCCATCAAGTGA 1035 46.18 MQSKSKSVNQLESEPRNMQQMSSYSEPWWRSIGYNPISPPAAGGNVSNSPSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSQAASYGQGQQNNQHAVSTAPTVHGGCITQPPQLELVGHSIACAPTPYQDPYYAGVMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKAKESGSGQAISSQSASSSGSEAVPGALAETWNSSHGQQEARVQLHEAYEARSYVNGSSHFHNYSSFQASSFALRSGERGEDGDCSGQQRGSISDNQAAQRRLAIK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47081214 47086527 - Maker00001216 Lcy8g2090 640982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2090 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 313 344 - -
Lcy8g2090 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 206 263 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 1 107 - -
Lcy8g2090 344 Gene3D - 168 230 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 1 29 - -
Lcy8g2090 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 227 262 - -
Lcy8g2090 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 285 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 206 222 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 84 107 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2252 Lcy-Chr4:49061923 Lcy8g2090 Lcy-Chr8:47081214 8.84E-29 dispersed
Lcy2g1215 Lcy-Chr2:12594737 Lcy8g2090 Lcy-Chr8:47081214 5.79E-98 wgd
Lcy3g1906 Lcy-Chr3:46293655 Lcy8g2090 Lcy-Chr8:47081214 6.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20599 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2090 K08064 - csv:101212961 562.762