Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2090 ATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACGAAATATGCAGCAGATGAGTAGTTATTCTGAGCCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGCCAGCAGCAGGAGGAAATGTGTCCAATTCACCATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCGAATGATGATTTGAATGAAGATGATGATGACGACACCACAAAAGATTCACAAGCTGCAAGTTATGGGCAAGGACAGCAGAATAATCAGCATGCTGTCTCTACTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCACCAACTCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCTATGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAACCAGTTTTTGTGAATGCCAAGCAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGCTTTGCCAAGAAAAATGAAGTTAACTCTTCGAGCTCTACTATGAAGGCTAAGGAATCCGGTTCTGGTCAAGCTATCTCGTCGCAGTCTGCTAGTTCATCTGGTTCTGAAGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCCATGGTCAACAAGAAGCAAGGGTCCAGTTGCATGAGGCATATGAAGCTCGTAGTTATGTGAATGGCAGTAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCATCATTTGCTTTGCGCTCTGGTGAGAGAGGTGAAGATGGAGACTGTTCAGGACAGCAACGAGGAAGTATCTCAGATAATCAGGCGGCACAGAGGCGTCTTGCCATCAAGTGA 1035 46.18 MQSKSKSVNQLESEPRNMQQMSSYSEPWWRSIGYNPISPPAAGGNVSNSPSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSQAASYGQGQQNNQHAVSTAPTVHGGCITQPPQLELVGHSIACAPTPYQDPYYAGVMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKAKESGSGQAISSQSASSSGSEAVPGALAETWNSSHGQQEARVQLHEAYEARSYVNGSSHFHNYSSFQASSFALRSGERGEDGDCSGQQRGSISDNQAAQRRLAIK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47081214 47086527 - Maker00001216 Lcy8g2090 640982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2090 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 313 344 - -
Lcy8g2090 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 206 263 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 1 107 - -
Lcy8g2090 344 Gene3D - 168 230 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 1 29 - -
Lcy8g2090 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 227 262 - -
Lcy8g2090 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2090 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 285 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy8g2090 344 MobiDBLite consensus disorder prediction 206 222 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 84 107 - -
Lcy8g2090 344 MobiDBLite consensus disorder prediction 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2090 K08064 - - csv:101212961 562.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2252 Lcy-Chr4:49061923 Lcy8g2090 Lcy-Chr8:47081214 8.84E-29 dispersed
Lcy2g1215 Lcy-Chr2:12594737 Lcy8g2090 Lcy-Chr8:47081214 5.79E-98 wgd
Lcy3g1906 Lcy-Chr3:46293655 Lcy8g2090 Lcy-Chr8:47081214 6.10E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g2090 . 1 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.3 4.1e-59 225.7
Lcy2g1215 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 5.2e-47 185.7
Lcy1g0127 . 26 177 CCAAT-HAP2 Transcription Factor Family AT2G34720 55.2 5.3e-38 154.8
Lcy1g0127 . 32 177 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.3 2.4e-42 169.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20599 None None None None Lcy TF