Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2098 ATGGAGACGAGTTTGGAGTGGGATTTGGAGGAGACGAGAGAATATTTCAAGACTGGAAAAACAAAGGAGCCATCTTGGAGGATTTCTCAGCTCAAAGCTTTACAACAACTTCTTAAACAAAATGAACAACAAATTTACAGTGCCCTTATGCAAGACTTGGGAAAACACCATGCTGAAGCCTTTAGAGATGAGATTGGTACTCTGGAAAAGTCCCTCAACTTTGCTTTGGAAAATTTGAAACATTGGATGAAACCCAAAAAGGCGAAATTGCCAGCAATGGCGTTTCTGAGTTCGGCAGAAGTGGTTCCACAGCCTCTGGGTGTTGTTCTTATATTCTCATCTTGGAATTTTCCGTTCGGGTTGTCGTTGGAGCCGTTGATAGGAGCAATAGCAGCCGGAAATTGCGTGTTTCTGAAGACGTCGGAGTTTGCTCCGGCGAGTTCGGATTTTCTGGCGAAAGCCATCGGAAAATATGTGGATGGTAAGGCGGTGAGAGTGGTGGAAGGAGGGGCGGCGGCCGGCGAGCGGCTGCTGCAGCAGCGGTGGGAGAAGATTTTCTTTACAGGAAGTGGACGAGTGGGGCGGATTGTGATGGCGGCAGCGGCGAAACACCTGACGCCGGTGACTTTGGAGCTCGGTGGGAAGTGCCCCGCCATTGTTGACCTTAACTCATTTTCATTTTCATGGGACATTGAGGCTACTGCTAAACGGCTCGTGATCGGAAAATTTGGACCCTGCGCCGGACAAGCTTGCATAGCAATCGATTACGTCCTCGTTGAACACAGATTTATATCCACATTGGTCGAATTGATGAAGAAGTTCACCAAGAAATTCTTCAATAAAAGTTCGAATCCAGAAAATAGCATGGCGAGGATCGTAAACAAACAAAATTTCTTGAGATTGAAGAATCTGGTGGACGAACCTGCTGTTCGAGCATCGATTGTTTATGGAGGAACCATGGACGAAGAGAAATTGTTTGTTGAGCCAACTATTCTGTTGAATCCACCAAACGATGCAGAAATTATGAGGGATGAAATCTTTGGACCATTCCTTCCCATAATTGGAGTGGATAAGATTGAAGACAGTATAGATTTCATCAATTCAAGGCCTAAGCCTCTCGCCCTTTATGCCTTCACAAAAGATAAAGCTCTCCAAAGAAGACTCGTCTCAGAAACTTCGTCCGGCAGCTTGACATTTAATGATGCAATTGTTCAGTATGTAGCCGATTCACTCCCATTTGGAGGGGTTGGTGAAAGTGGGATTGGGAGATACCATGGCAAATTCTCATTTGACACCTTTAGTCATGAAAAGGCAATTCTGAAGAGGGACTTCTTGTTGGACTTCTGGTTCAGATATCCACCATGGAACAATCACAAGCTTCAGCTGCTTAGAGAAGCTTACAACTTTAACTATTTTCAGTTAGTCCTCACTGTTTTGGGTCTCAAAAGGTCTTAA 1455 44.95 METSLEWDLEETREYFKTGKTKEPSWRISQLKALQQLLKQNEQQIYSALMQDLGKHHAEAFRDEIGTLEKSLNFALENLKHWMKPKKAKLPAMAFLSSAEVVPQPLGVVLIFSSWNFPFGLSLEPLIGAIAAGNCVFLKTSEFAPASSDFLAKAIGKYVDGKAVRVVEGGAAAGERLLQQRWEKIFFTGSGRVGRIVMAAAAKHLTPVTLELGGKCPAIVDLNSFSFSWDIEATAKRLVIGKFGPCAGQACIAIDYVLVEHRFISTLVELMKKFTKKFFNKSSNPENSMARIVNKQNFLRLKNLVDEPAVRASIVYGGTMDEEKLFVEPTILLNPPNDAEIMRDEIFGPFLPIIGVDKIEDSIDFINSRPKPLALYAFTKDKALQRRLVSETSSGSLTFNDAIVQYVADSLPFGGVGESGIGRYHGKFSFDTFSHEKAILKRDFLLDFWFRYPPWNNHKLQLLREAYNFNYFQLVLTVLGLKRS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47168691 47175667 + Maker00000415 Lcy8g2098 640990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2098 484 PIRSF ALDH 1 479 IPR012394 GO:0006081(InterPro)
Lcy8g2098 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 214 419 IPR016163 GO:0016620(InterPro)
Lcy8g2098 484 FunFam Aldehyde dehydrogenase 214 419 - -
Lcy8g2098 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 13 437 IPR016162 GO:0016491(InterPro)
Lcy8g2098 484 Pfam Aldehyde dehydrogenase family 10 438 IPR015590 GO:0016491(InterPro)
Lcy8g2098 484 FunFam Aldehyde dehydrogenase 13 226 - -
Lcy8g2098 484 SUPERFAMILY ALDH-like 10 457 IPR016161 GO:0016491(InterPro)
Lcy8g2098 484 PANTHER ALDEHYDE DEHYDROGENASE 5 481 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0946 Lcy-Chr6:9768399 Lcy8g2098 Lcy-Chr8:47168691 6.25E-201 dispersed
Lcy8g2098 Lcy-Chr8:47168691 Lcy9g1554 Lcy-Chr9:40668440 6.13E-154 dispersed
Lcy8g2098 Lcy-Chr8:47168691 Lcy12g0802 Lcy-Chr12:10447106 1.35E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2098 K00128 - csv:101205263 789.645