Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2102 ATGAGTGATCCTTACTCCATCAATGGCTCTTTTGGTTTATACCACTGCTTCTCTTCTTCTAATTCTTACTCTCCTTATGATCTCTTCTCTTTTTCTTACAACAATCATAACAACAACAATACAACAACTCATGAATTGTTCTCTCCTCCTTCTACTTCATCTCCTCAAATCCTTCCCCTTTTAAGCTTAAGCCCTGCAAGACATGAAGAGGATCACTCATTTTCAAACAACAACAAGTTGTGTAGCCCTTGTGAAGATCATGATGAGACTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCAACACCTCCTTCTTCTTCCTCCTCTTCTGATCTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATAAAGAAGATCAATTGGAAGAAGCTGTTCCTCCTCTTCCTATTGTTGTTCCTAATTACTACTCTTCTTCTTCCTTATCTTCCACTGCCACTGCTGGACTCAACAAGGGTCAGTATTGGATTCCAACTCCTGCCCAGATTCTCATTGGTCCAACTCAGTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGCTTGACTTTTCTTATTGTCAAGATTTCACTGACGTCTTAAGTATTGTTGAGCTAAATGTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACAGCCATGCTAAGGCTCCCATGCTACTGCTGTGCCCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCACTGAAAGACTTCAGAACCCTTCAAACACATTACAAAAGGAAGCATGGAATCAAGCCATTTACGTGTAGAAAGTGTGGGAAAGCGTTTGCTGTGAGAGGGGATTGGAGAACTCACGAGAAGAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGGATTGACTCTTTTGACGAAGATGATGAACCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTCAGTAATGGAGATTCATAG 1095 42.1 MSDPYSINGSFGLYHCFSSSNSYSPYDLFSFSYNNHNNNNTTTHELFSPPSTSSPQILPLLSLSPARHEEDHSFSNNNKLCSPCEDHDETVTVALHLGLPTPTPPSSSSSSDLILRLSSTEISDKEDQLEEAVPPLPIVVPNYYSSSSLSSTATAGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQLDFSYCQDFTDVLSIVELNVQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEPASEIEHDNDLSLSNGDS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47205856 47208674 + Maker00001215 Lcy8g2102 640994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2102 364 SUPERFAMILY beta-beta-alpha zinc fingers 263 302 IPR036236 -
Lcy8g2102 364 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 281 305 - -
Lcy8g2102 364 MobiDBLite consensus disorder prediction 343 364 - -
Lcy8g2102 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 309 IPR013087 -
Lcy8g2102 364 Gene3D Classic Zinc Finger 242 330 - -
Lcy8g2102 364 FunFam Zinc finger protein WIP2 251 333 - -
Lcy8g2102 364 PANTHER ZINC FINGER PROTEIN WIP2 34 356 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2103 Lcy-Chr1:28576337 Lcy8g2102 Lcy-Chr8:47205856 5.00E-121 dispersed
Lcy5g0658 Lcy-Chr5:8156638 Lcy8g2102 Lcy-Chr8:47205856 3.35E-117 dispersed
Lcy5g1135 Lcy-Chr5:24245473 Lcy8g2102 Lcy-Chr8:47205856 7.94E-100 dispersed
Lcy3g1915 Lcy-Chr3:46395653 Lcy8g2102 Lcy-Chr8:47205856 4.02E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20601 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2102 - - - 0.0