Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2105 ATGGGATCCATGAATTCAAACAATTGGCTTTCATTTCCACTTTCACCCACAAATCCTTCTTTACCACCACATCTTCAAACAACAACTCAATCCCATCACTTCTCTTTGGGCAATTTGGAGAATGATAATATGGACATCCCATTTCAAACCCATGAGTGGAATCTGATAAGTAGCCAAAGTGGAGGTGAAGTTCCAAAAGTTGCAGACTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCAGGGTAATGATACAGACTACTTGTTTCCAATCACAAGATTGGTTCCTGTTCAACAAGCCACACCAGCCATAAATGTGGACTCTACCACTAACTATGACCTCCAAGACAATTCAAATAGTCTGCAGTCTTTGACCCTTTCAATGGGCAGTGGCAAGGGCTCAACTTGTGAAACCACCACGCCTGATAATACCTCCAATACCACTGTTGATGTCACTCCTAGAAGAACTTTGGACACTTTCGGCCAAAGAACCTCAATTTATCGCGGTGTCACGAGGTATTATAACGACTCTGATACCATGTTGAAATCGTCAGTTAAGTTTAAATTGATGGGTGAGGATGTATTTGTATGTTACAGACATCGATGGACGGGTAGATATGAAGCACATTTGTGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGGCAAGGTGGATATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTACTGGGGCACATCCACCACCACAAACTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACGAGACAAGAATTTGTGGCTGCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGAGCATCAATGTATCGTGGAGTTACAAGGCATCACCAGCATGGAAGATGGCAGGCGAGGATTGGAAGAGTTGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCATACGACATAGCGGCGATAAAATTCAGAGGGCTAAACGCAGTGACAAACTTCGACATGAGCCGCTACGACGTGAAAAGCATATTAGAGAGCAACACGCTCCCGATTGGCGGCGGTGCAGCCAAACGGCTGAAGGAGGCTCAAGCCATCGAATCCTCTCGAAAGCGCGACGAAATGATCGCCCTTGGCTCCTCCTCCTCGTTCCAATACGGCAGCTCCTCAACGAATTCCTCGAATCACAGGCTTCAACAACCCAATTACCCTTTACTCCAACAGCAACAGCCACAACCCAATCTGAATCTCGACCACCACCTTCAAACCCAGCCTTTGCTCTCTCTTCAAAACCACCACGACATTTCTCACTACACCCACGATCCGGCGTCGTTTCACCACTCTTCTTACATGCACACCCACCTCCAGCTCCACCACCACCAATCTGATTCCCCTTACGGTAGCAACAACCATCAATTCTACGGCGGCGGTGGTGGTGGCGGTGGGTATCTTCATAATCATCCGGCTTTGCTTCATGGGATGATCAACATGGGCGGAGGAGGAGGAGGGTCTAATTTGGAGACTAGTAACAACAATGCGAATAGTTTTAATAATCCCAATAGTAATACTAATGGAGGGTATCTTGGAAATGCCTTTGGGATGGGGTCTACCTCGGCCGCGGCGAACGGCGGCGCTCCGGCGGAGGAGTACGCTCTTGTTAAGGTTGATTATGATATGCCTAATTCTGGTGCGTATGGGAGCTGGTCTGGCGATTCGGTTCAGGGTTCTAACAATGGGGTTTTCTCTATGTGGAATGATTGA 1833 46.64 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTQSHHFSLGNLENDNMDIPFQTHEWNLISSQSGGEVPKVADFLGVSKAENETDLIGFNEIHQGNDTDYLFPITRLVPVQQATPAINVDSTTNYDLQDNSNSLQSLTLSMGSGKGSTCETTTPDNTSNTTVDVTPRRTLDTFGQRTSIYRGVTRYYNDSDTMLKSSVKFKLMGEDVFVCYRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSTNSSNHRLQQPNYPLLQQQQPQPNLNLDHHLQTQPLLSLQNHHDISHYTHDPASFHHSSYMHTHLQLHHHQSDSPYGSNNHQFYGGGGGGGGYLHNHPALLHGMINMGGGGGGSNLETSNNNANSFNNPNSNTNGGYLGNAFGMGSTSAAANGGAPAEEYALVKVDYDMPNSGAYGSWSGDSVQGSNNGVFSMWND 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47235768 47238493 + Maker00000406 Lcy8g2105 640997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2105 610 SMART rav1_2 301 365 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 SMART rav1_2 208 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 SUPERFAMILY DNA-binding domain 300 361 IPR016177 GO:0003677(InterPro)
Lcy8g2105 610 CDD AP2 208 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 134 461 - -
Lcy8g2105 610 ProSiteProfiles AP2/ERF domain profile. 175 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 Pfam AP2 domain 302 351 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 Gene3D AP2/ERF domain 204 267 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 Gene3D AP2/ERF domain 301 361 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 FunFam AP2-like ethylene-responsive transcription factor 300 361 - -
Lcy8g2105 610 CDD AP2 300 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 ProSiteProfiles AP2/ERF domain profile. 301 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g2105 610 MobiDBLite consensus disorder prediction 136 159 - -
Lcy8g2105 610 SUPERFAMILY DNA-binding domain 207 267 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1105 Lcy-Chr6:12454166 Lcy8g2105 Lcy-Chr8:47235768 1.62E-105 dispersed
Lcy8g2105 Lcy-Chr8:47235768 Lcy9g2006 Lcy-Chr9:44947296 3.50E-98 dispersed
Lcy8g2105 Lcy-Chr8:47235768 Lcy4g1350 Lcy-Chr4:32415061 6.61E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20602 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2105 K09285 - csv:101207097 858.981