Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g2105 | ATGGGATCCATGAATTCAAACAATTGGCTTTCATTTCCACTTTCACCCACAAATCCTTCTTTACCACCACATCTTCAAACAACAACTCAATCCCATCACTTCTCTTTGGGCAATTTGGAGAATGATAATATGGACATCCCATTTCAAACCCATGAGTGGAATCTGATAAGTAGCCAAAGTGGAGGTGAAGTTCCAAAAGTTGCAGACTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCAGGGTAATGATACAGACTACTTGTTTCCAATCACAAGATTGGTTCCTGTTCAACAAGCCACACCAGCCATAAATGTGGACTCTACCACTAACTATGACCTCCAAGACAATTCAAATAGTCTGCAGTCTTTGACCCTTTCAATGGGCAGTGGCAAGGGCTCAACTTGTGAAACCACCACGCCTGATAATACCTCCAATACCACTGTTGATGTCACTCCTAGAAGAACTTTGGACACTTTCGGCCAAAGAACCTCAATTTATCGCGGTGTCACGAGGTATTATAACGACTCTGATACCATGTTGAAATCGTCAGTTAAGTTTAAATTGATGGGTGAGGATGTATTTGTATGTTACAGACATCGATGGACGGGTAGATATGAAGCACATTTGTGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGGCAAGGTGGATATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTACTGGGGCACATCCACCACCACAAACTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACGAGACAAGAATTTGTGGCTGCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGAGCATCAATGTATCGTGGAGTTACAAGGCATCACCAGCATGGAAGATGGCAGGCGAGGATTGGAAGAGTTGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCATACGACATAGCGGCGATAAAATTCAGAGGGCTAAACGCAGTGACAAACTTCGACATGAGCCGCTACGACGTGAAAAGCATATTAGAGAGCAACACGCTCCCGATTGGCGGCGGTGCAGCCAAACGGCTGAAGGAGGCTCAAGCCATCGAATCCTCTCGAAAGCGCGACGAAATGATCGCCCTTGGCTCCTCCTCCTCGTTCCAATACGGCAGCTCCTCAACGAATTCCTCGAATCACAGGCTTCAACAACCCAATTACCCTTTACTCCAACAGCAACAGCCACAACCCAATCTGAATCTCGACCACCACCTTCAAACCCAGCCTTTGCTCTCTCTTCAAAACCACCACGACATTTCTCACTACACCCACGATCCGGCGTCGTTTCACCACTCTTCTTACATGCACACCCACCTCCAGCTCCACCACCACCAATCTGATTCCCCTTACGGTAGCAACAACCATCAATTCTACGGCGGCGGTGGTGGTGGCGGTGGGTATCTTCATAATCATCCGGCTTTGCTTCATGGGATGATCAACATGGGCGGAGGAGGAGGAGGGTCTAATTTGGAGACTAGTAACAACAATGCGAATAGTTTTAATAATCCCAATAGTAATACTAATGGAGGGTATCTTGGAAATGCCTTTGGGATGGGGTCTACCTCGGCCGCGGCGAACGGCGGCGCTCCGGCGGAGGAGTACGCTCTTGTTAAGGTTGATTATGATATGCCTAATTCTGGTGCGTATGGGAGCTGGTCTGGCGATTCGGTTCAGGGTTCTAACAATGGGGTTTTCTCTATGTGGAATGATTGA | 1833 | 46.64 | MGSMNSNNWLSFPLSPTNPSLPPHLQTTTQSHHFSLGNLENDNMDIPFQTHEWNLISSQSGGEVPKVADFLGVSKAENETDLIGFNEIHQGNDTDYLFPITRLVPVQQATPAINVDSTTNYDLQDNSNSLQSLTLSMGSGKGSTCETTTPDNTSNTTVDVTPRRTLDTFGQRTSIYRGVTRYYNDSDTMLKSSVKFKLMGEDVFVCYRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSTNSSNHRLQQPNYPLLQQQQPQPNLNLDHHLQTQPLLSLQNHHDISHYTHDPASFHHSSYMHTHLQLHHHQSDSPYGSNNHQFYGGGGGGGGYLHNHPALLHGMINMGGGGGGSNLETSNNNANSFNNPNSNTNGGYLGNAFGMGSTSAAANGGAPAEEYALVKVDYDMPNSGAYGSWSGDSVQGSNNGVFSMWND | 610 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 47235768 | 47238493 | + | Maker00000406 | Lcy8g2105 | 640997 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g2105 | 610 | SMART | rav1_2 | 301 | 365 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | SMART | rav1_2 | 208 | 271 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | SUPERFAMILY | DNA-binding domain | 300 | 361 | IPR016177 | GO:0003677(InterPro) | |
Lcy8g2105 | 610 | CDD | AP2 | 208 | 267 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 134 | 461 | - | - | |
Lcy8g2105 | 610 | ProSiteProfiles | AP2/ERF domain profile. | 175 | 265 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | Pfam | AP2 domain | 302 | 351 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | Gene3D | AP2/ERF domain | 204 | 267 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | Gene3D | AP2/ERF domain | 301 | 361 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | FunFam | AP2-like ethylene-responsive transcription factor | 300 | 361 | - | - | |
Lcy8g2105 | 610 | CDD | AP2 | 300 | 361 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | ProSiteProfiles | AP2/ERF domain profile. | 301 | 359 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g2105 | 610 | MobiDBLite | consensus disorder prediction | 136 | 159 | - | - | |
Lcy8g2105 | 610 | SUPERFAMILY | DNA-binding domain | 207 | 267 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g1105 | Lcy-Chr6:12454166 | Lcy8g2105 | Lcy-Chr8:47235768 | 1.62E-105 | dispersed | |
Lcy8g2105 | Lcy-Chr8:47235768 | Lcy9g2006 | Lcy-Chr9:44947296 | 3.50E-98 | dispersed | |
Lcy8g2105 | Lcy-Chr8:47235768 | Lcy4g1350 | Lcy-Chr4:32415061 | 6.61E-117 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20602 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g2105 | K09285 | - | csv:101207097 | 858.981 |