Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2106 ATGGATTCGGCTCACCCATCCGCTCCAGAGCTCGATCTACACAATCTCACAGCCCTCAAGGTGCTCGGAAAAGGAGCCATGGGGACCGTCTTTCTCGTACACGAACAGATCCTTGATGACGCTGCTAATTTCCCTTTTGCTCTCAAGGTCGTCGAGAAATCCTCTTTCGTCTCCAAGCCCGACGCCGAGCGCCGAGCCCGTTGGGAGATTCAGGTTCTTTCCCGGTTGTCACTCCCTAAACCCCACCCCTTTCTTCCTCACATTCTCGGTTCTTTCGAGTCCGACGAGTTTCTGGGCTGGGCGGTTCCCTACTGTCCCGGCGGCGACCTCAACGTCTTGCGTTACCGCCAAATGGACCGGGTTTTTTCACCGGCTGTCATTCGGTTTTATTTGGCCGAGATCGTCTGTGCCCTCGAGCATCTTCACAGCATGGACATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATACAACAATCGGGTCACGTCACTCTCACGGATTTTGATTTGTCGCGTAATTTGACTCACAGACCATTAAAAGACGTCGTTTCGCTTGATAATTCCGGCCACGAGAAGCCGCCGGTGGCCGTACGGCAAAAGCACCGTCGGAATTTGACGCGATGGATCATGTCGACCTCCAACGTTAAAAACGGTTTAAAGAAGGCTAAATCGGCTCGGGTCAGCCCTGTGAGCCGCCGGAAGCCGAGTTTTACCAATGGCGAGCGGTCGAACTCGTTCGTCGGAACGGAGGAGTACGTTTCGCCGGAGATCGTTCGAGGCGACGGACATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTACGGGAGGACGCCGTTTAAGGGAAAGAACCGGAAAGAAACCTTTCGAAACGTTCTGGTCAAAGCTCCGGAGTTGATCGGGAAACGTTCGGATTTAACGGATTTGATCGAACGGTTGCTGGTCAAGGACCCCACCAGGCGGTTGGGGTACGTAAGGGGCGCGTTTGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACGGAGGTCATGCGACCGCCATTTTTACCGCCTCGTGAAGAAAGAGAATGGACGGAGAATTTAACGGCCGGTGGTGTGGGTATAACGGAATACTTTCATAGACAGAGATTGCTGCCTTCGATTCCACCGTCGCCGTCGTCGTCTCCGTCGACCTCCTTCCATTGGCAGAATAACAGCATATCTTTAACGGAGTTCTGA 1254 53.35 MDSAHPSAPELDLHNLTALKVLGKGAMGTVFLVHEQILDDAANFPFALKVVEKSSFVSKPDAERRARWEIQVLSRLSLPKPHPFLPHILGSFESDEFLGWAVPYCPGGDLNVLRYRQMDRVFSPAVIRFYLAEIVCALEHLHSMDIVYRDLKPENVLIQQSGHVTLTDFDLSRNLTHRPLKDVVSLDNSGHEKPPVAVRQKHRRNLTRWIMSTSNVKNGLKKAKSARVSPVSRRKPSFTNGERSNSFVGTEEYVSPEIVRGDGHEFAVDWWALGILTYEMLYGRTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTRRLGYVRGAFEIKEHAFFNGVKWDLLTEVMRPPFLPPREEREWTENLTAGGVGITEYFHRQRLLPSIPPSPSSSPSTSFHWQNNSISLTEF 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47250171 47251424 + Maker00000838 Lcy8g2106 640998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2106 417 SMART serkin_6 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g2106 417 FunFam Serine/threonine-protein kinase OXI1 109 177 - -
Lcy8g2106 417 Gene3D Transferase(Phosphotransferase) domain 1 241 363 - -
Lcy8g2106 417 MobiDBLite consensus disorder prediction 221 243 - -
Lcy8g2106 417 SUPERFAMILY Protein kinase-like (PK-like) 15 411 IPR011009 -
Lcy8g2106 417 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524(InterPro)
Lcy8g2106 417 FunFam Serine/threonine-protein kinase UCNL 16 108 - -
Lcy8g2106 417 FunFam Serine/threonine-protein kinase OXI1 242 363 - -
Lcy8g2106 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g2106 417 Gene3D Phosphorylase Kinase; domain 1 16 104 - -
Lcy8g2106 417 Gene3D Transferase(Phosphotransferase) domain 1 105 176 - -
Lcy8g2106 417 PANTHER FLIPPASE KINASE 1-RELATED 10 365 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy8g2106 417 Pfam Protein kinase domain 18 182 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g2106 417 Pfam Protein kinase domain 239 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g2106 417 Gene3D Phosphorylase Kinase; domain 1 364 373 - -
Lcy8g2106 417 ProSiteProfiles Protein kinase domain profile. 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1338 Lcy-Chr3:39775917 Lcy8g2106 Lcy-Chr8:47250171 1.06E-88 dispersed
Lcy8g1981 Lcy-Chr8:46074575 Lcy8g2106 Lcy-Chr8:47250171 6.41E-72 dispersed
Lcy8g1982 Lcy-Chr8:46090413 Lcy8g2106 Lcy-Chr8:47250171 3.45E-74 dispersed
Lcy8g2106 Lcy-Chr8:47250171 Lcy11g1600 Lcy-Chr11:39858277 3.14E-13 dispersed
Lcy8g2106 Lcy-Chr8:47250171 Lcy4g0413 Lcy-Chr4:5030181 4.07E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66157 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2106 - - - 0.0