Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2142 ATGAAAACCGAGGGTCCTTTTGCTCTGCTTATTATGATTGTTTTTCTCCTGCTCTGTGGTTCCACAAGGTCGCAATTAACTGTGGATTTCTATAAGCGTTCATGTCCAAACCTTCACAGAATCGTGAGGAGAGAAGTCGTGAATGCTCTCAAGAACGAGATGCGAATGGCCGCTTCGCTTCTTCGTCTCCACTTCCACGACTGCTTTGTTAACGGTTGTGACGGATCCGTGCTGCTGGATGGAAGTGATGGGGAGAAATTTGCACTTCCGAATATCAATTCTCTTAGAGGGCTTGAAGTTATGGATACAATCAAAACCGCAGTGGAAAATTCTTGCAGTGGAGTTGTCTCGTGTGCTGATATATTAACCATAGCTGCCAGGGATTCTGTTCTATTGAGTGGAGGACCGACGTGGAGGGTTTTATTAGGGAGAAGGGATGGATTGGTAGCGAACCAAACTGGAGCCAATCAAGGACTGCCCGCTCCATTTGAAGATCTGGATGGTATTCTCAAGAAGTTCACTGATGTTGGCCTTGATCTCACTGACGTCGTTGCTTTATCTGGAGCCCATACAATTGGATTCGCAAGGTGTGCGATGTTCAACAACAGGCTATTCAACTTCTCAGGAACTGGGTCTCCAGACCCGACCATGGAGAGCAGAATGGTGTCGGATCTGCAAGCTCTGTGCCCTCTCACCGACGACGGCAACAAGACCACAGTTCTCGACAGAAACTCCACCGATTTATTCGACAACCATTACTACAACAACTTGCTCAACCAAAAGGGCCTCTTGGAATCCGACCAAATCCTGTCCTCAGGCCCTGCAGCTCAAACCACCACAAAAAGCTTGGTCGAAGCTTATAGCTCCAACACCACGCTTTTCTTCAAAGACTTTGCGAGTGGCATGATCAAGATGGGGAATATAAGCCCACTCACTGGCTCCAATGGAGAGATCCGAAAGAATTGCAGAGTGGTTAATTCCTAA 984 47.36 MKTEGPFALLIMIVFLLLCGSTRSQLTVDFYKRSCPNLHRIVRREVVNALKNEMRMAASLLRLHFHDCFVNGCDGSVLLDGSDGEKFALPNINSLRGLEVMDTIKTAVENSCSGVVSCADILTIAARDSVLLSGGPTWRVLLGRRDGLVANQTGANQGLPAPFEDLDGILKKFTDVGLDLTDVVALSGAHTIGFARCAMFNNRLFNFSGTGSPDPTMESRMVSDLQALCPLTDDGNKTTVLDRNSTDLFDNHYYNNLLNQKGLLESDQILSSGPAAQTTTKSLVEAYSSNTTLFFKDFASGMIKMGNISPLTGSNGEIRKNCRVVNS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47576073 47578310 + Maker00000219 Lcy8g2142 641034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2142 327 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 Pfam Peroxidase 42 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 FunFam Peroxidase 160 305 - -
Lcy8g2142 327 CDD secretory_peroxidase 25 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g2142 327 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Lcy8g2142 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lcy8g2142 327 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 ProSiteProfiles Plant heme peroxidase family profile. 25 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 PANTHER PEROXIDASE 72-RELATED 10 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2142 327 Gene3D Peroxidase, domain 2 160 305 - -
Lcy8g2142 327 Gene3D - 30 326 - -
Lcy8g2142 327 FunFam Peroxidase 29 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g2142 Lcy-Chr8:47576073 2.06E-116 dispersed
Lcy6g1012 Lcy-Chr6:10895091 Lcy8g2142 Lcy-Chr8:47576073 4.49E-89 dispersed
Lcy7g0385 Lcy-Chr7:3268116 Lcy8g2142 Lcy-Chr8:47576073 7.58E-90 dispersed
Lcy8g1056 Lcy-Chr8:36318939 Lcy8g2142 Lcy-Chr8:47576073 1.57E-103 dispersed
Lcy8g1452 Lcy-Chr8:41193682 Lcy8g2142 Lcy-Chr8:47576073 4.10E-77 dispersed
Lcy8g1701 Lcy-Chr8:43574041 Lcy8g2142 Lcy-Chr8:47576073 1.39E-90 dispersed
Lcy8g1703 Lcy-Chr8:43592359 Lcy8g2142 Lcy-Chr8:47576073 2.55E-98 dispersed
Lcy8g2142 Lcy-Chr8:47576073 Lcy8g2148 Lcy-Chr8:47619498 1.87E-97 dispersed
Lcy8g2142 Lcy-Chr8:47576073 Lcy8g2143 Lcy-Chr8:47581654 1.41E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2142 K00430 - csv:101211257 537.339