Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2143 ATGTCGTCGTTTAAAGTTGTAGCTTTAGTTATCTTTGTTTGTATGTTGTCGTTGAGGGGTTCTTGGGCTCAGCTCAGCCCTACCTTCTACGACCAAACATGCCCCAATCTAACCGCGGTCGTCAATGAGGCAATAAGGCAGGCATTGCAGGGAGATGTTCGAGCTGGAGCCAAGCTCATTCGCTTTCACTTCCACGACTGTTTTGTCAACGGTTGTGATGGATCGGTTCTATTAGAGAATGCAGATGGCATAGAGAGTGAGTTAGATGCTCCTGGGAATCAAGGAATACAAGGGTTCGACATCGTCGACAACATCAAAACTGCAGTAGAAGCTGCCTGCCCGAACACCGTGTCTTGTGCCGATATCTTAGCCATTGCATCTCGTGAATCTGTCATCTTGACGGGAGGGCCGGGTTGGGAAGTTCAATTGGGAAGAAGAGATAGCCGAATAGCAAATAGATCTGGAGCTACAAGCAATCTCCCTAGCCCCTTTGAAACCCTTACTCAACTTCAGGTCAAATTTGCTGCAGTTGGCCTCGATTCTACCGATCTTGTTGCTTTATCCGGAGCACATACATTCGGTAGGTCAAGATGCAGATTCTTCAGCCGGCGGCTAAACAATTTCAATGGCACTAGCAGTCCAGACCTAACTCTAGACCCCACACTCCGGGACGCACTGATCATCGCTTGTCCGCCCGGCGACATAGACAACCGGATCGCACTTGACGTTACCACGCCGGACGACTTCGACAATGCATATTATAGCAATCTGGTAAACAATCGTGGGCTTCTACAATCTGATCAAGAGCTCTTCTCAACCGTCGGGGCCGAAACCATCGACCCAGTCAATCGCTTTGCCACCAATCAAACCGATTTCTTTGTTCAGTTTGGTCAGTCCATGATAAACATGGGTAACATTACCCCTTTGACCGGAACCGATGGAGAAATTAGGTCAACTTGTAGGCGCGTTAATCCTTTGCAGAATAGGGCTGTTATGTGA 999 48.35 MSSFKVVALVIFVCMLSLRGSWAQLSPTFYDQTCPNLTAVVNEAIRQALQGDVRAGAKLIRFHFHDCFVNGCDGSVLLENADGIESELDAPGNQGIQGFDIVDNIKTAVEAACPNTVSCADILAIASRESVILTGGPGWEVQLGRRDSRIANRSGATSNLPSPFETLTQLQVKFAAVGLDSTDLVALSGAHTFGRSRCRFFSRRLNNFNGTSSPDLTLDPTLRDALIIACPPGDIDNRIALDVTTPDDFDNAYYSNLVNNRGLLQSDQELFSTVGAETIDPVNRFATNQTDFFVQFGQSMINMGNITPLTGTDGEIRSTCRRVNPLQNRAVM 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47581654 47583644 + Maker00001327 Lcy8g2143 641035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2143 332 FunFam Peroxidase 28 174 - -
Lcy8g2143 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Lcy8g2143 332 PANTHER PEROXIDASE 72-RELATED 9 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 Pfam Peroxidase 41 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g2143 332 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2143 332 FunFam Peroxidase 161 303 - -
Lcy8g2143 332 Gene3D - 29 324 - -
Lcy8g2143 332 Gene3D Peroxidase, domain 2 161 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1382 Lcy-Chr12:30983940 Lcy8g2143 Lcy-Chr8:47581654 5.77E-153 dispersed
Lcy8g2143 Lcy-Chr8:47581654 Lcy8g2148 Lcy-Chr8:47619498 7.56E-136 dispersed
Lcy8g2142 Lcy-Chr8:47576073 Lcy8g2143 Lcy-Chr8:47581654 1.41E-100 tandem
Lcy8g2143 Lcy-Chr8:47581654 Lcy8g2144 Lcy-Chr8:47587957 1.27E-144 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2143 K00430 - csv:101217743 517.309