Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2144 ATGGCTTCCAATTTCAGAGTACACTTGCCCTTCTTCTGCTTTGTGGGTTTGATGGTGGGAGGCTCCTTGGCTCAGCTAAGCCCTTCATTTTACGCCAAATCATGTCCTAATTTAGCCAAGATTGTAAACGGCGTTGTCGCACAAGCACTGCGAACCGACGCTCGAGCTGGAGCTAAGCTCATTCGTCTCCACTTCCACGACTGCTTTGTCGACGGGTGCGATGCGTCTGTTTTGTTAGAGAACGCACCTGGCATAGACAGTGAGCTAGATGCCCCTGGAAATCAGGGTATTCAAGGTCTTAACATCGTCGACGACATCAAATCCGCTGTCGAAAAGGCTTGCCCACGCACTGTCTCCTGTGCCGACATCTTAACCATTGCATCCAAAGAATCTGTCGCTGGAGGGCCGAGCTGGATTGTGCCACTGGGACGGAGAGACAGCAGAACAGCCAATAGAGATGGAGCCTCAAACAACCTTGCCAGTCCCTTCGAAGACCTCAATGGACTCAAAGCCAAGTTCGCTGCTTTTGGCCTCGATTCTACTGATGTTGTTGCTTTGTCTGGAGCGCATACGTTTGGGCGTTCGAGATGCGGATTTTTCAGCCATCGATTTGCGAACTTCAATGGCACGAACAGGCCAGATCCAACACTAGACCCAGCCTACAGAGAGCAGCTCCGGAGGCTGTGCTCAAGCTCAGAGACACGAGCCAATTTCGACCCGACGACCCCAGACAAGTTCGACAAAAACTATTACACCAACCTTCAGGGCCTTCGCGGGCTTCTTCAGAGCGACCAGGAACTGTTCTCGACTCGCGGGGCTGACACGGTCGCCATTGTCAACCGTTTTGCCCAAAGCCAGGATGAGTTCTTCAAAAGCTTTGGTCGGTCCATGATCAAAATGGGAAACATCAGCCCTTTAACTGGAAGGAGAGGAGAGATCAGATTGAACTGTCGGAGGGTTAATCCATCAAGGGCTGATGATGGTCATGATGTTATGTAA 999 51.25 MASNFRVHLPFFCFVGLMVGGSLAQLSPSFYAKSCPNLAKIVNGVVAQALRTDARAGAKLIRLHFHDCFVDGCDASVLLENAPGIDSELDAPGNQGIQGLNIVDDIKSAVEKACPRTVSCADILTIASKESVAGGPSWIVPLGRRDSRTANRDGASNNLASPFEDLNGLKAKFAAFGLDSTDVVALSGAHTFGRSRCGFFSHRFANFNGTNRPDPTLDPAYREQLRRLCSSSETRANFDPTTPDKFDKNYYTNLQGLRGLLQSDQELFSTRGADTVAIVNRFAQSQDEFFKSFGRSMIKMGNISPLTGRRGEIRLNCRRVNPSRADDGHDVM 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47587957 47590060 + Maker00000884 Lcy8g2144 641036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2144 332 CDD secretory_peroxidase 25 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g2144 332 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 FunFam Peroxidase 29 172 - -
Lcy8g2144 332 Pfam Peroxidase 43 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Lcy8g2144 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lcy8g2144 332 SUPERFAMILY Heme-dependent peroxidases 25 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PANTHER PEROXIDASE 72-RELATED 15 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 Gene3D - 30 321 - -
Lcy8g2144 332 FunFam Peroxidase 160 300 - -
Lcy8g2144 332 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2144 332 Gene3D Peroxidase, domain 2 160 300 - -
Lcy8g2144 332 ProSiteProfiles Plant heme peroxidase family profile. 25 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g2144 Lcy-Chr8:47587957 Lcy8g2148 Lcy-Chr8:47619498 1.51E-159 dispersed
Lcy8g2143 Lcy-Chr8:47581654 Lcy8g2144 Lcy-Chr8:47587957 1.27E-144 tandem
Lcy8g2144 Lcy-Chr8:47587957 Lcy8g2145 Lcy-Chr8:47595930 1.09E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2144 K00430 - csv:101211507 543.502