Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2145 ATGGCTTCCCCTAAACTTACAGCCTTTGTGGTGGTCGTAGCTTTGATGCTGGGCAGCTCTCACGCGCTTAACCCTTTCTTCTACGCCTTCTCATGCCCTCAGCTGCCTTTTGTTGTACTAGACGTGGTCGCACAAGCTCTACAAACCGATGATCGAGCAGCTGCCAAGCTCATTCGTCTCCATTTTCACGACTGCTTCGCCAATGGTTGTGACGGGTCTGTGCTACTGGAGGACGTACCGGGCGTCATCGATAGTGAACTAAACGCACCTCCAAACAACGGCATCCAAGGGCTGGATATCGTGGACAACATCAAAGCAGCAGTTGAAAGCGCTTGCCCAGGCGTTGTTTCCTGTGCTGACATTTTAGCCCTCGCCTCTCAAATTTCTGTCGTATTGTCTGGTGGGCCGGCCTGGGTGGTTCTACTGGGAAGAAAAGACAGCAGAATAGCCAACAGAACCGCAGCCTCAAATCTTCCGAGTCCGTTCGAGACGCTGAATGTGCTGAAAGCGAAATTCGCAGCGTTTGGGCTTGATTCTACGGACCTGGTGACTCTGTCAGGAGCGCACACGTTCGGTCGAGCCAGATGCCTTTTCTTCAATGGGCGGTTCGACAACTTCAACAACACGGGCCTCCCAGACCCGACTCTGGACGCTGCTTACAGAGAGCAGCTTCGTCAAGCCTGCACCACCCCAACGACACGAGTAAACTTTGACCCAGTCACACCAGTCACATTCGACAAAAACTACTACATCAATCTTAGAAACCACAAGGGGCTTCTCCAAAGTGACCAAGAGCTTTTCTCCACGCCTGGGGCTGATACCACTGCCATTGTCAACACATTTGCCGCCAGCCAGCTTCTCTTCTTTATTCAATTTGGGAATTCCATGATCAAGATGGGCAATCTCGGCCCTCCACCTGGCACCCCATCCGAAGAATCTCCCTTTCCACTCCTTGTTCACAAAATCAAAACCCAATTGTTCTCGAACATGGCTTCCCCTAAACTCACAGCCTTTGCTGTTGTGGCGGCTCTGATGCTAGCGAGCTCTCACGCTCAGCTTAACCCTTTCTTCTACGCCTACACATGCCCTCAACTCCCTTTCATTGTTGCAGACGTGATTGCGCGAGCTCTACAAACTGACGAACGAGCAGCTGCCAAACTCATTCGCCTCCATTTCCACGACTGTTTCGTCAATGGGTGCGACGGTTCTGTGTTGCTTGAGGCTGCTGCGGGCATCGACAGTGAATTAGACGCACCCCCAAACAGTGGGATCCAAGGGCTGGACATCGTGGACAACATCAAAGCAGCACTCGAAACCTCTTGCCCAGGCGTTGTTTCATGCGCTGACATCTTAGCCATTTCTTCTCAAATCTCTGTTGTCTTGTCGGGAGGCCCATTTTGGTTAGCTCCACTGGGAAGAAAAGACAGCAGAATAGCCAACAAAACCGGGACCTCAAATCTTCCCGGTCCGTCAGAACCTCTTTCCGGACTTAAAGCCAAGTTTGGAGCTCTTGGGTTCGATTCTACGGATCTGGTGGCTCTATCAGGAGCACACACGTTCGGTAAAGCAAGATGCTTTTTCTTCAACGGCCGCTTCGACAACTTCAACAACACCGGAAAACCCGACCCGACGCTAGACCCGACTTACAGGGAGCAGCTTCGAGGACTATGTACTACCCCACAAACCCGAGTGAATTTCGACCCGACCACGCCAACAAAATTCGACAAAGCCTACTACTCCAATCTGCTGAGCCTGAAGGGGCTTCTCCAAAGTGACCAGGAGCTCTTCTCCACGCCCAAGGCCGATACCATAGCCATCGTGAAAAAATTCGCTGCCAACGAGAAGGCCTTCTTTAAACAATTTGTGGAATCCATGATCAAAATGGGGAATCTGAAGCCTCCATCGGGCATCAAATCAGAAGTCAGATTAAACTGCAGGAGGGTCAACCCGGTGAAGGCCTTTGATATTATGTAA 1974 51.32 MASPKLTAFVVVVALMLGSSHALNPFFYAFSCPQLPFVVLDVVAQALQTDDRAAAKLIRLHFHDCFANGCDGSVLLEDVPGVIDSELNAPPNNGIQGLDIVDNIKAAVESACPGVVSCADILALASQISVVLSGGPAWVVLLGRKDSRIANRTAASNLPSPFETLNVLKAKFAAFGLDSTDLVTLSGAHTFGRARCLFFNGRFDNFNNTGLPDPTLDAAYREQLRQACTTPTTRVNFDPVTPVTFDKNYYINLRNHKGLLQSDQELFSTPGADTTAIVNTFAASQLLFFIQFGNSMIKMGNLGPPPGTPSEESPFPLLVHKIKTQLFSNMASPKLTAFAVVAALMLASSHAQLNPFFYAYTCPQLPFIVADVIARALQTDERAAAKLIRLHFHDCFVNGCDGSVLLEAAAGIDSELDAPPNSGIQGLDIVDNIKAALETSCPGVVSCADILAISSQISVVLSGGPFWLAPLGRKDSRIANKTGTSNLPGPSEPLSGLKAKFGALGFDSTDLVALSGAHTFGKARCFFFNGRFDNFNNTGKPDPTLDPTYREQLRGLCTTPQTRVNFDPTTPTKFDKAYYSNLLSLKGLLQSDQELFSTPKADTIAIVKKFAANEKAFFKQFVESMIKMGNLKPPSGIKSEVRLNCRRVNPVKAFDIM 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47595930 47601120 + Maker00000733 Lcy8g2145 641037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2145 657 FunFam Peroxidase 356 497 - -
Lcy8g2145 657 FunFam Peroxidase 159 299 - -
Lcy8g2145 657 CDD secretory_peroxidase 23 311 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g2145 657 ProSitePatterns Peroxidases proximal heme-ligand signature. 510 520 IPR019793 -
Lcy8g2145 657 Gene3D - 357 649 - -
Lcy8g2145 657 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
Lcy8g2145 657 Gene3D Peroxidase, domain 2 159 299 - -
Lcy8g2145 657 Gene3D Peroxidase, domain 2 488 628 - -
Lcy8g2145 657 PRINTS Plant peroxidase signature 444 454 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 386 406 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 509 521 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 623 636 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 425 438 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 463 478 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 581 598 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 362 381 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Plant peroxidase signature 565 580 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Haem peroxidase superfamily signature 567 582 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 ProSiteProfiles Plant heme peroxidase family profile. 22 311 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 SUPERFAMILY Heme-dependent peroxidases 23 311 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 SUPERFAMILY Heme-dependent peroxidases 352 650 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 Gene3D - 27 308 - -
Lcy8g2145 657 Pfam Peroxidase 41 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 Pfam Peroxidase 369 613 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Lcy8g2145 657 ProSitePatterns Peroxidases active site signature. 384 395 IPR019794 GO:0004601(InterPro)
Lcy8g2145 657 FunFam Peroxidase 488 628 - -
Lcy8g2145 657 CDD secretory_peroxidase 352 648 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g2145 657 PANTHER PEROXIDASE 72-RELATED 342 648 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2145 657 ProSiteProfiles Plant heme peroxidase family profile. 352 649 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2166 Lcy-Chr10:45617250 Lcy8g2145 Lcy-Chr8:47595930 3.01E-126 dispersed
Lcy2g0736 Lcy-Chr2:6515072 Lcy8g2145 Lcy-Chr8:47595930 8.26E-154 dispersed
Lcy8g2145 Lcy-Chr8:47595930 Lcy8g2148 Lcy-Chr8:47619498 1.58E-125 dispersed
Lcy8g2144 Lcy-Chr8:47587957 Lcy8g2145 Lcy-Chr8:47595930 1.09E-143 tandem
Lcy8g2145 Lcy-Chr8:47595930 Lcy8g2146 Lcy-Chr8:47602993 5.21E-205 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2145 K00430 - csv:101211752 555.444