Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2146 ATGGCTTCCCCTAAACTTACAGCCTTTGCCCTGGTGCTGGCTTTGTTGCTGGCGACCTCTCAAGCTCAGCTTAACCCTTTCTTCTACGCCTTAACATGCCCTCTCCTGCCCGGGATTGTTCTCGACGTCGTCTCCCGAGCTCTACAAACCGACGATCGAGCAGCTGCCAAGCTCATTCGCCTCCATTTCCACGACTGCTTCGTCAATGGATGTGACGGTTCTGTGCTGCTGGAACCCGCACCGGGCATCGACAGTGAATTAAACGGGCCACCAAACAATGGGATTCAAGGGCTAGACATAGTAGACAACATCAAAGCAGAACTTGAAAGATTTTGCCCCGGCGTCGTTTCATGCGCTGACATCTTAGCCATTTCCTCTCAAATTTCTGTTTTCTTGTCGGGAGGGCCAGCTTGGATGGTTCCATTGGGAAGAAAAGACAGCAGAATAGCCAACAGAACCGGAACCTCAAATCTTCCTGGTCCATCAGAACCTCTTACCGGACTTAAAGCCAAGTTTGGAGCTCTTGGGTTCGATTCTACGGATCTGGTGGCTCTATCAGGAGCACACACGTTCGGTAAAGCAAGATGCCTTTTCTTCAACGGCCGCTTCGACAACTTCAACAACACCGGCAAACCCGACCCGACGCTAGACCCGACTTACAGAGAGCAGCTTCGGAGACTATGTACGACCCCACAAACACGAGTGAATTTCGACCCGACCACGCCAACAAAATTCGACAAAGCCTACTATTCCAATCTGCTGAGCCTCAAGGGGCTTCTCCAAAGTGACCAAGAGCTGTTCTCCACGCCCAGGGCTGATACCACGGCGATCGTAAAGAATTTCGCCGCTAACGAGATTGCGTTCTTTAATCAATTTGTGAAATCGATTATCAAAATGGGGAATCTCAAAGCTCCGGCCGGCATCAGATCAGAAGTGAGATTAAACTGTAGGAGGGTCAACCCGGTGGCTGCCCATGATGTTATGTAA 987 50.66 MASPKLTAFALVLALLLATSQAQLNPFFYALTCPLLPGIVLDVVSRALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLEPAPGIDSELNGPPNNGIQGLDIVDNIKAELERFCPGVVSCADILAISSQISVFLSGGPAWMVPLGRKDSRIANRTGTSNLPGPSEPLTGLKAKFGALGFDSTDLVALSGAHTFGKARCLFFNGRFDNFNNTGKPDPTLDPTYREQLRRLCTTPQTRVNFDPTTPTKFDKAYYSNLLSLKGLLQSDQELFSTPRADTTAIVKNFAANEIAFFNQFVKSIIKMGNLKAPAGIRSEVRLNCRRVNPVAAHDVM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47602993 47604503 + Maker00000305 Lcy8g2146 641038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2146 328 CDD secretory_peroxidase 23 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g2146 328 PANTHER PEROXIDASE 72-RELATED 13 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 Pfam Peroxidase 42 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 Gene3D Peroxidase, domain 2 159 299 - -
Lcy8g2146 328 ProSiteProfiles Plant heme peroxidase family profile. 23 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2146 328 FunFam Peroxidase 159 299 - -
Lcy8g2146 328 Gene3D - 28 320 - -
Lcy8g2146 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Lcy8g2146 328 SUPERFAMILY Heme-dependent peroxidases 23 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g2146 Lcy-Chr8:47602993 Lcy8g2148 Lcy-Chr8:47619498 9.41E-131 dispersed
Lcy8g2145 Lcy-Chr8:47595930 Lcy8g2146 Lcy-Chr8:47602993 5.21E-205 tandem
Lcy8g2146 Lcy-Chr8:47602993 Lcy8g2147 Lcy-Chr8:47606931 1.29E-133 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2146 K00430 - csv:101211989 520.776