Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g2148 | ATGGCCTCCTCCTCCAATGCCGTAGCCTTTTTCTTCTTTCTCGCTCTTCTCTTCGGAGGCTCTTTCGCTCAACTCTCCGAAAGCTTTTACGACCAAACCTGCCCTCGTCTCCCCAACATTGTCCGCGCCGCCGTCAAGAAAGCTATCGAATCCGACATCCGTGCCGGTGCTAAACTCATCCGCCTCCATTTCCACGACTGCTTCGTCAATGGCTGCGATGGCTCTGTTTTGCTCGAGGATGCTCCCGGTATAGACAGCGAGCTCAACTCACCCGGAAATCAAGGAATCCAAGGACTTGAAATTGTCGACGCCATTAAATCCGCCGTCGAGGCCGAATGTCCCGGCATCGTCTCCTGCGCCGACATCCTGGCTCAGGCCTCTAAGGACTCTGTCGATGTGCTAGTTCTTGACCCAAGAACAAAAAATGTCATCTTTTTAAATTTTCAGCAAGGCGGGCCTAGTTGGAGAGTGTTATACGGAAGAAGAGACAGTAGAATAGCGAACAGAACAGGGGCCGATGCTGGCCTGGCCAGTCCCTTCGAAACTCTCGACGAACTCAAAGCCAAATTCGCTGCTGTGGGTCTCAGTACCACCGACCTCGTCGCTTTATCTGGAGCGCATACGTTTGGTCGATCGAGGTGCATGTTCTTCAGCCACCGATTTGCCAACTTCAGCGGTACCGGAAGGCCAGATCCATCGCTGGACGCCAACTACAGGCGATTCCTAGAAGGGGTTTGTTCAGCAGGTGGAGAGACACGAGCCAATTTCGACCCAACAACACCCGACGTGTTCGACAAAAACTACTACACCAACCTTCAAGCAGGGAAGGGGCTTCTCCAAAGCGACCAAGAGCTGTTGTCCACTCCCGGAGCCGACACCATCCCCATTGTCAACAGATTCGCCGCCAGGGAAGGCACTTTCTTCAAGGAGTTCCGCCAGTCCATGATCAACATGGGCAATATCAAGCCTTTGACTGGCCGCCGTGGGGAAATCAGAAGAAACTGCAGAAGGGTCAACGCCGCCTTGGGCGGAGAAGGCCACGATGTTATGTAA | 1053 | 53.56 | MASSSNAVAFFFFLALLFGGSFAQLSESFYDQTCPRLPNIVRAAVKKAIESDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIDSELNSPGNQGIQGLEIVDAIKSAVEAECPGIVSCADILAQASKDSVDVLVLDPRTKNVIFLNFQQGGPSWRVLYGRRDSRIANRTGADAGLASPFETLDELKAKFAAVGLSTTDLVALSGAHTFGRSRCMFFSHRFANFSGTGRPDPSLDANYRRFLEGVCSAGGETRANFDPTTPDVFDKNYYTNLQAGKGLLQSDQELLSTPGADTIPIVNRFAAREGTFFKEFRQSMINMGNIKPLTGRRGEIRRNCRRVNAALGGEGHDVM | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 47619498 | 47621102 | + | Maker00001433 | Lcy8g2148 | 641040 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g2148 | 350 | CDD | secretory_peroxidase | 24 | 338 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Lcy8g2148 | 350 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 199 | 209 | IPR019793 | - | |
| Lcy8g2148 | 350 | FunFam | Peroxidase | 177 | 318 | - | - | |
| Lcy8g2148 | 350 | Gene3D | Peroxidase, domain 2 | 177 | 318 | - | - | |
| Lcy8g2148 | 350 | SUPERFAMILY | Heme-dependent peroxidases | 24 | 339 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | Pfam | Peroxidase | 41 | 302 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | ProSitePatterns | Peroxidases active site signature. | 56 | 67 | IPR019794 | GO:0004601(InterPro) | |
| Lcy8g2148 | 350 | Gene3D | - | 29 | 339 | - | - | |
| Lcy8g2148 | 350 | ProSiteProfiles | Plant heme peroxidase family profile. | 24 | 339 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Haem peroxidase superfamily signature | 257 | 272 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Haem peroxidase superfamily signature | 56 | 70 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Haem peroxidase superfamily signature | 199 | 214 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Haem peroxidase superfamily signature | 117 | 134 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Plant peroxidase signature | 58 | 78 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Plant peroxidase signature | 271 | 288 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Plant peroxidase signature | 255 | 270 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Plant peroxidase signature | 151 | 166 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Plant peroxidase signature | 198 | 210 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Plant peroxidase signature | 313 | 326 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PRINTS | Plant peroxidase signature | 34 | 53 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy8g2148 | 350 | PANTHER | PEROXIDASE 72-RELATED | 14 | 338 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy8g2142 | Lcy-Chr8:47576073 | Lcy8g2148 | Lcy-Chr8:47619498 | 1.87E-97 | dispersed | |
| Lcy8g2143 | Lcy-Chr8:47581654 | Lcy8g2148 | Lcy-Chr8:47619498 | 7.56E-136 | dispersed | |
| Lcy8g2144 | Lcy-Chr8:47587957 | Lcy8g2148 | Lcy-Chr8:47619498 | 1.51E-159 | dispersed | |
| Lcy8g2145 | Lcy-Chr8:47595930 | Lcy8g2148 | Lcy-Chr8:47619498 | 1.58E-125 | dispersed | |
| Lcy8g2146 | Lcy-Chr8:47602993 | Lcy8g2148 | Lcy-Chr8:47619498 | 9.41E-131 | dispersed | |
| Lcy8g2148 | Lcy-Chr8:47619498 | Lcy8g2150 | Lcy-Chr8:47639919 | 3.31E-117 | dispersed | |
| Lcy8g2147 | Lcy-Chr8:47606931 | Lcy8g2148 | Lcy-Chr8:47619498 | 2.83E-171 | tandem | |
| Lcy8g2148 | Lcy-Chr8:47619498 | Lcy8g2149 | Lcy-Chr8:47629152 | 3.96E-128 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g2148 | K00430 | - | csv:101217781 | 567.77 |