Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2149 ATGGCTTCCTTCAAAGCTATTGCTTTCTTTTTTCTTGTGGGGTTGATGGTCATCGGAGTTTCTAAAGCTCAGCTGTGCCCCACGTTTTACGACGACTCATGCCCCGACGTATCGAACATTGTGCGGAGTGTGGTGAGTCGAGCTTTAGAGACCGATGACCGAGCAGGCGCTCGACTCATTCGCCTTCACTTCCACGACTGCTTCGTCGACGGTTGTGATGGGTCAGTTCTACTAGTGGACCAACCGGGCGTAGTGAGTGAGCTTGGAGCTCCTGGAAATGCGAATATCACAGGATTTAACATTGTTGATGACATCAAAGCTGCTCTGGAAGAGGCTTGTCCTGGCGTTGTTTCATGTGCCGACATCTTAGCCATAGCTTCTGTAGAAGCCGTTTCCTTGGCAGGAGGACCCTGTTGGGAGGTACAACTGGGAAGAAGAGACAGGCGAATGGCCAACTTACAAGGCGCAATCGATGGTCTTCCAAGTCCCTTCGAAAATGTCACAGAACTCAAAGCCAAGTTCGGTAGAGTGGGTCTTGATTCTACTGATCTTGTTGCTTTATCTGGTGCCCACACGTTCGGGCGTTCAAGATGCCGATTTTTCGACAGACGATTGAACGTTTCAAGCCCAGACAACACACTGGACGCCTCATATGCAGCCCAGCTACGTCGAGCTTGTGCCAGCAGCCGAGACACTTTCGTAAACCTCGACCCCACCACTCCCGACGACTTCGACAACAACTACTTCACAAACCTTCAGTCCAACTCCGGCCTTCTCATCAGCGACCAAGTCCTCCACTCCACCCGCGGCGCCGACACCGTCGGCATCGTCGACATGTTCTCCGCCAGCCAGCAGCAGTTCTTCGACAGCTTCGGCCAGTCCATGATCAACATGGGAAATATCAGCCCTTTAACTGGAGACCAGGGAGAAATTAGGTTTAATTGCAGAAGACTCAACTGA 960 51.77 MASFKAIAFFFLVGLMVIGVSKAQLCPTFYDDSCPDVSNIVRSVVSRALETDDRAGARLIRLHFHDCFVDGCDGSVLLVDQPGVVSELGAPGNANITGFNIVDDIKAALEEACPGVVSCADILAIASVEAVSLAGGPCWEVQLGRRDRRMANLQGAIDGLPSPFENVTELKAKFGRVGLDSTDLVALSGAHTFGRSRCRFFDRRLNVSSPDNTLDASYAAQLRRACASSRDTFVNLDPTTPDDFDNNYFTNLQSNSGLLISDQVLHSTRGADTVGIVDMFSASQQQFFDSFGQSMINMGNISPLTGDQGEIRFNCRRLN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47629152 47632579 + Maker00001025 Lcy8g2149 641041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2149 319 PANTHER PEROXIDASE 72-RELATED 14 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Lcy8g2149 319 Gene3D Peroxidase, domain 2 161 298 - -
Lcy8g2149 319 Gene3D - 29 319 - -
Lcy8g2149 319 FunFam Peroxidase 161 298 - -
Lcy8g2149 319 FunFam Peroxidase 28 176 - -
Lcy8g2149 319 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 CDD secretory_peroxidase 24 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g2149 319 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Lcy8g2149 319 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g2149 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g2147 Lcy-Chr8:47606931 Lcy8g2149 Lcy-Chr8:47629152 1.13E-127 dispersed
Lcy8g2149 Lcy-Chr8:47629152 Lcy3g1848 Lcy-Chr3:45652727 3.83E-68 dispersed
Lcy8g2148 Lcy-Chr8:47619498 Lcy8g2149 Lcy-Chr8:47629152 3.96E-128 tandem
Lcy8g2149 Lcy-Chr8:47629152 Lcy8g2150 Lcy-Chr8:47639919 4.38E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2149 K00430 - csv:101212717 519.235