Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2151 ATGGCCTCTGCAAAAGCCAATACTGTGTCACTAATAAAGACGAAGCGCAGCCCCATTTCAAAAAGGGCGACACCAGTTCAACCCTCGCGGGAGTTGCTCCACCTCACAACCCACCCTCTTGTTCTTGTCTTTCGATTTTCTTTTGGGGCCCAAGAATTATGCAATTATTGGATTGTTGAGCGGCGTAAAGTTGAATATTCAACCATTTGGGGTTCAGAATCTTTTCTCCCTGCTGCATTTCTCTACCATTTTGCACTTCTCCTGCTGTTTTCTGGTCGATCAGTTTCAGTACCTTCAAGTTTTCCATCTGGGTACGGCGGTTTCTTTGCCTTCTTTTCATTGCTTTCACATTTCATATTGCTTCTTCTTTCTGGATATGAATTTGATATAGGCAAATATGCTGGCATGAGTACTGTAGACTACAGAGAGAACGGAATGTATCAGCAGCAGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACTGAGCTGCGCCTTACATCGATAGATTCTGAAGCAGCAACTTCTCGTTCAGAGTCCAAAGGTGTCTCTTTCAGGAAAGCTTCCACTGGTGGTTTTGTCAGGAATCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAACTGCTGCCCTACCTGCCGCCACGAGCTTGGGAACATAAGGTGCCTGGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTATGTACGAAAACCTAGGTTGCATTGACATATTCCCATACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATTCCGCCCGTACAACTGTCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGAAGATCACGAGGTCGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCCACATGGATGCTTACTGTTTTTAACTGCTTTGGACGACAGTTCTGCTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCGGTTTACATGGCGTTCCTCCGGTTCATGGGCGACGATGATGATGCGAAACAATTTTCTTATAGTCTGGAAGTTGGTGGGAATGGCAGAAAACTCATCTGGCAAGGTATGCCAAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGTCATGATGGATTAATCATTCAGAGGAACTTGGCACTTTTCTGCTCTGGAAATGAAGGGCAGGAATTGAAGCTAAAGGTTGCAGGGCGAATATGGAGAGTGAGGTGA 1383 45.48 MASAKANTVSLIKTKRSPISKRATPVQPSRELLHLTTHPLVLVFRFSFGAQELCNYWIVERRKVEYSTIWGSESFLPAAFLYHFALLLLFSGRSVSVPSSFPSGYGGFFAFFSLLSHFILLLLSGYEFDIGKYAGMSTVDYRENGMYQQQKSREEHASSAASFCKEVTELRLTSIDSEAATSRSESKGVSFRKASTGGFVRNRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCMYENLGCIDIFPYYSKLKHEKNCKFRPYNCPYAGGECSVTGDIPYLVMHLKEDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGMPRSIRDSHRKVRDSHDGLIIQRNLALFCSGNEGQELKLKVAGRIWRVR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47645821 47649047 + Maker00000749 Lcy8g2151 641043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2151 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 320 IPR013083 -
Lcy8g2151 460 FunFam E3 ubiquitin-protein ligase SINAT5-like 321 453 - -
Lcy8g2151 460 Pfam Sina, zinc finger 261 336 - -
Lcy8g2151 460 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 212 247 IPR049548 -
Lcy8g2151 460 SUPERFAMILY RING/U-box 203 254 - -
Lcy8g2151 460 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 162 455 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lcy8g2151 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 264 IPR013083 -
Lcy8g2151 460 CDD RING-HC_SIAHs 210 248 - -
Lcy8g2151 460 ProSiteProfiles Zinc finger RING-type profile. 212 248 IPR001841 -
Lcy8g2151 460 FunFam E3 ubiquitin-protein ligase SINAT3 262 320 - -
Lcy8g2151 460 SUPERFAMILY TRAF domain-like 265 456 - -
Lcy8g2151 460 ProSiteProfiles Zinc finger SIAH-type profile. 265 325 IPR013010 GO:0008270(InterPro)
Lcy8g2151 460 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 321 453 IPR008974 GO:0005515(InterPro)
Lcy8g2151 460 Pfam Sina, TRAF-like domain 356 452 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0691 Lcy-Chr7:6398544 Lcy8g2151 Lcy-Chr8:47645821 6.29E-137 dispersed
Lcy8g2151 Lcy-Chr8:47645821 Lcy1g2128 Lcy-Chr1:29369174 1.93E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2151 K04506 - csv:101213438 640.188