Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2184 ATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTGTACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCGGTTTTCGAGGAGCATAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTTAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACAGCCAGTAGCCATGAATGCCTTCGAGTTAATTTCAATGTCAAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAACAAGATTGAAGAAGCTGCCAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTATAAGATGAGACTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTCAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTCTGTTCATGTAGTTGAGATGCGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGGTACTTCCTCTACTAGTTCGAAAAGTCGTTCTCCCTTCATATATGATACCAGATGATATGTTTAGGATCAGAATTTACCTAACTCGACGCCATACGAATGCAAATGCTTTGCATATTAGCTATCTTTCTTTTAGTTTTGTAATCTGTAATTCCATACTTGGTTCTTTGAAACTATATGGTTCTGTATTATCTTTGCAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACCGAGGAAGACATGCAAGAAACAAAGTGA 795 38.99 MKLIARILDPNPMTRITVPEILEDEWFKKDYKPPVFEEHKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKVLPLLVRKVVLPSYMIPDDMFRIRIYLTRRHTNANALHISYLSFSFVICNSILGSLKLYGSVLSLQFYKNLSTSLEDVVWKTEEDMQETK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47915589 47920538 + Maker00000781 Lcy8g2184 641076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2184 264 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 173 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy8g2184 264 ProSiteProfiles NAF domain profile. 65 89 IPR018451 GO:0007165(InterPro)
Lcy8g2184 264 CDD CIPK_C 71 175 - -
Lcy8g2184 264 Pfam NAF domain 67 126 IPR004041 GO:0007165(InterPro)
Lcy8g2184 264 Gene3D Kinase associated domain 1, KA1 64 184 - -
Lcy8g2184 264 FunFam Non-specific serine/threonine protein kinase 64 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g2184 Lcy-Chr8:47915589 Lcy1g0262 Lcy-Chr1:2377264 8.80E-30 dispersed
Lcy8g2184 Lcy-Chr8:47915589 Lcy5g1703 Lcy-Chr5:39519352 2.30E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2184 - - - 0.0