Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g2188 | ATGGCTATCACAGCCCCAGGGCAGCTTAACGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGGTCTGCTATACATGCCTATACCCTTCTCCGCCTTATTTTAATTATCCGTTGCGGTAGTTATTGTTTGTTAGGATCTGGAGATCTTTCTTTGCGTCAAGTTTACATGGCTCGCGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATCACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAACCAGGCATGTGCTCTGTTGTCATTTGCAGCACTAGCCTTCAATGCCATATAATTGTCCTTTATATTTTAGTAGAATTTAGTTGCAACAGTGCAAATGGTAACAAGTACAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACCGGCCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTACATAGAGATATAAAAGGCTCAAATCTCCTAATTGACAATGAAGGAAATCTGAAACTTGCAGATTTTGGGCTTGCTCGATCATTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGGCCTCCTGAACTGCTGCTTGGGTCGACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGGTAGGGGCTTTTCTGTGTAATTTTAATGCTTAA | 951 | 41.64 | MAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGSAIHAYTLLRLILIIRCGSYCLLGSGDLSLRQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGMCSVVICSTSLQCHIIVLYILVEFSCNSANGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEVGAFLCNFNA | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 47937030 | 47939944 | - | Maker00001241 | Lcy8g2188 | 641080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g2188 | 316 | SUPERFAMILY | Protein kinase-like (PK-like) | 59 | 315 | IPR011009 | - | |
Lcy8g2188 | 316 | SMART | serkin_6 | 25 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g2188 | 316 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 46 | - | - | |
Lcy8g2188 | 316 | Gene3D | Phosphorylase Kinase; domain 1 | 58 | 144 | - | - | |
Lcy8g2188 | 316 | Pfam | Protein kinase domain | 60 | 306 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g2188 | 316 | CDD | STKc_CDK9_like | 25 | 307 | - | - | |
Lcy8g2188 | 316 | Gene3D | Phosphorylase Kinase; domain 1 | 170 | 180 | - | - | |
Lcy8g2188 | 316 | PANTHER | CELL DIVISION PROTEIN KINASE | 25 | 307 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Lcy8g2188 | 316 | FunFam | Mitogen-activated protein kinase | 181 | 313 | - | - | |
Lcy8g2188 | 316 | ProSiteProfiles | Protein kinase domain profile. | 25 | 316 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g2188 | 316 | Gene3D | Transferase(Phosphotransferase) domain 1 | 181 | 308 | - | - | |
Lcy8g2188 | 316 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 220 | 232 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g1356 | Lcy-Chr5:32393205 | Lcy8g2188 | Lcy-Chr8:47937030 | 7.02E-81 | dispersed | |
Lcy7g1607 | Lcy-Chr7:31296850 | Lcy8g2188 | Lcy-Chr8:47937030 | 4.67E-90 | dispersed | |
Lcy7g1608 | Lcy-Chr7:31314808 | Lcy8g2188 | Lcy-Chr8:47937030 | 1.01E-21 | dispersed | |
Lcy8g2188 | Lcy-Chr8:47937030 | Lcy9g0129 | Lcy-Chr9:2818138 | 1.87E-71 | dispersed | |
Lcy8g2188 | Lcy-Chr8:47937030 | Lcy7g1603 | Lcy-Chr7:31271690 | 2.32E-136 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66163 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g2188 | K08819 | - | csv:101220936 | 473.781 |