Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2188 ATGGCTATCACAGCCCCAGGGCAGCTTAACGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGGTCTGCTATACATGCCTATACCCTTCTCCGCCTTATTTTAATTATCCGTTGCGGTAGTTATTGTTTGTTAGGATCTGGAGATCTTTCTTTGCGTCAAGTTTACATGGCTCGCGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATCACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAACCAGGCATGTGCTCTGTTGTCATTTGCAGCACTAGCCTTCAATGCCATATAATTGTCCTTTATATTTTAGTAGAATTTAGTTGCAACAGTGCAAATGGTAACAAGTACAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACCGGCCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTACATAGAGATATAAAAGGCTCAAATCTCCTAATTGACAATGAAGGAAATCTGAAACTTGCAGATTTTGGGCTTGCTCGATCATTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGGCCTCCTGAACTGCTGCTTGGGTCGACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGGTAGGGGCTTTTCTGTGTAATTTTAATGCTTAA 951 41.64 MAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGSAIHAYTLLRLILIIRCGSYCLLGSGDLSLRQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGMCSVVICSTSLQCHIIVLYILVEFSCNSANGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEVGAFLCNFNA 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47937030 47939944 - Maker00001241 Lcy8g2188 641080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2188 316 SUPERFAMILY Protein kinase-like (PK-like) 59 315 IPR011009 -
Lcy8g2188 316 SMART serkin_6 25 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g2188 316 Gene3D Phosphorylase Kinase; domain 1 12 46 - -
Lcy8g2188 316 Gene3D Phosphorylase Kinase; domain 1 58 144 - -
Lcy8g2188 316 Pfam Protein kinase domain 60 306 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g2188 316 CDD STKc_CDK9_like 25 307 - -
Lcy8g2188 316 Gene3D Phosphorylase Kinase; domain 1 170 180 - -
Lcy8g2188 316 PANTHER CELL DIVISION PROTEIN KINASE 25 307 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy8g2188 316 FunFam Mitogen-activated protein kinase 181 313 - -
Lcy8g2188 316 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g2188 316 Gene3D Transferase(Phosphotransferase) domain 1 181 308 - -
Lcy8g2188 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1356 Lcy-Chr5:32393205 Lcy8g2188 Lcy-Chr8:47937030 7.02E-81 dispersed
Lcy7g1607 Lcy-Chr7:31296850 Lcy8g2188 Lcy-Chr8:47937030 4.67E-90 dispersed
Lcy7g1608 Lcy-Chr7:31314808 Lcy8g2188 Lcy-Chr8:47937030 1.01E-21 dispersed
Lcy8g2188 Lcy-Chr8:47937030 Lcy9g0129 Lcy-Chr9:2818138 1.87E-71 dispersed
Lcy8g2188 Lcy-Chr8:47937030 Lcy7g1603 Lcy-Chr7:31271690 2.32E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66163 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2188 K08819 - csv:101220936 473.781