Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2198 ATGGCCACGAGTTTGGCCCATTATCACAGGCCCGAGTTTCTCACCATCGCCGTCGCGGTCGTCGCTATCGGCGTTGGCACTGCCTACTATTTCTACATCACCAAGAAATCCAAGGCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGGTCGCAGCTTAGCCATAATGTGGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAGTCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGGTTTTATTCGCTTCTCAATACTCGTTCATTTTCTGATCCAAGAAGAAGCTATGTTCCATTTCTGAAAGGGAAAGATAGCAAAGGTGAAGATGTTGTGAAACCGTACACTCCAACCACTTTGGATACAGATGTTGGGTACTTCGATCTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCCAAGGATATTGGATTTGGCATACGATATAAGGGTCTCTGGAAGAAGGTTCAGTGGACTTCTGGGATGGGGGGCAGTGAGGGACGTTTCAAGTACGAGCCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTACAAGAGCAATACTAGAAAATCCCGTAGACCGAACTAATGTGCATCTTATATATGCTAATGTTACTTATGAAGACATTCTTCTAAAGGAAGAACTGGATAGCCTTGCAACTAGGTTTCCCTCCCGCTTCACCATCTACTATGTTCTCAATCAGCCTCCTGAAGGATGGGATGGTGGCATTGGCTTTGTAACTGAGGAAATGATACGACAACGTTGTCCTGCACCATCCCCTAATGTTCGGGTGGGTATTCTAATACACTCTCAGCTCTCCATTTCTGCTTCATTCATTTTTCTTTCTACAAGTTTTTATGCTAAAAAAAAGTATGCATTCTTCATTTCGCTACAGATCTTGAGGTGCGGGCCACCCCCCATGAACAAAGTTATGGCTGCTTACCTCAACAGCATTGGCTACACTTCCCAAATGCAGTTCCAGTTCTAA 1095 45.48 MATSLAHYHRPEFLTIAVAVVAIGVGTAYYFYITKKSKAKGCLDPDNFKEFKLVKRSQLSHNVAKFRFSLPTPTSVLGLPIGQHMSCRFYSLLNTRSFSDPRRSYVPFLKGKDSKGEDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKDIGFGIRYKGLWKKVQWTSGMGGSEGRFKYEPNEVEAFGMLAGGTGITPMFQVTRAILENPVDRTNVHLIYANVTYEDILLKEELDSLATRFPSRFTIYYVLNQPPEGWDGGIGFVTEEMIRQRCPAPSPNVRVGILIHSQLSISASFIFLSTSFYAKKKYAFFISLQILRCGPPPMNKVMAAYLNSIGYTSQMQFQF 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48074655 48078193 - Maker00001472 Lcy8g2198 641090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2198 364 FunFam NADH-cytochrome b5 reductase 187 304 - -
Lcy8g2198 364 FunFam NADH-cytochrome b5 reductase 41 162 - -
Lcy8g2198 364 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 172 IPR017927 GO:0016491(InterPro)
Lcy8g2198 364 Pfam Oxidoreductase NAD-binding domain 206 295 IPR001433 GO:0016491(InterPro)
Lcy8g2198 364 PANTHER NADH-CYTOCHROME B5 REDUCTASE 18 364 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lcy8g2198 364 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 190 299 IPR039261 -
Lcy8g2198 364 SUPERFAMILY Riboflavin synthase domain-like 42 166 IPR017938 -
Lcy8g2198 364 Pfam Oxidoreductase FAD-binding domain 51 93 IPR008333 -
Lcy8g2198 364 Pfam Oxidoreductase FAD-binding domain 112 166 IPR008333 -
Lcy8g2198 364 Gene3D - 189 364 IPR039261 -
Lcy8g2198 364 Gene3D Translation factors 38 165 - -
Lcy8g2198 364 CDD cyt_b5_reduct_like 51 364 - -
Lcy8g2198 364 PRINTS Cytochrome B5 reductase signature 103 110 - -
Lcy8g2198 364 PRINTS Cytochrome B5 reductase signature 243 254 - -
Lcy8g2198 364 PRINTS Cytochrome B5 reductase signature 77 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2198 K00326 - - csv:101219272 470.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1745 Lcy-Chr1:18443871 Lcy8g2198 Lcy-Chr8:48074655 1.25E-64 dispersed
Lcy4g2124 Lcy-Chr4:47774141 Lcy8g2198 Lcy-Chr8:48074655 1.03E-50 dispersed
Lcy8g2198 Lcy-Chr8:48074655 Lcy9g1590 Lcy-Chr9:41108148 6.55E-37 dispersed
Lcy8g2198 Lcy-Chr8:48074655 Lcy5g0764 Lcy-Chr5:11200692 1.04E-126 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86