Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g2198 ATGGCCACGAGTTTGGCCCATTATCACAGGCCCGAGTTTCTCACCATCGCCGTCGCGGTCGTCGCTATCGGCGTTGGCACTGCCTACTATTTCTACATCACCAAGAAATCCAAGGCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGGTCGCAGCTTAGCCATAATGTGGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAGTCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGGTTTTATTCGCTTCTCAATACTCGTTCATTTTCTGATCCAAGAAGAAGCTATGTTCCATTTCTGAAAGGGAAAGATAGCAAAGGTGAAGATGTTGTGAAACCGTACACTCCAACCACTTTGGATACAGATGTTGGGTACTTCGATCTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCCAAGGATATTGGATTTGGCATACGATATAAGGGTCTCTGGAAGAAGGTTCAGTGGACTTCTGGGATGGGGGGCAGTGAGGGACGTTTCAAGTACGAGCCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTACAAGAGCAATACTAGAAAATCCCGTAGACCGAACTAATGTGCATCTTATATATGCTAATGTTACTTATGAAGACATTCTTCTAAAGGAAGAACTGGATAGCCTTGCAACTAGGTTTCCCTCCCGCTTCACCATCTACTATGTTCTCAATCAGCCTCCTGAAGGATGGGATGGTGGCATTGGCTTTGTAACTGAGGAAATGATACGACAACGTTGTCCTGCACCATCCCCTAATGTTCGGGTGGGTATTCTAATACACTCTCAGCTCTCCATTTCTGCTTCATTCATTTTTCTTTCTACAAGTTTTTATGCTAAAAAAAAGTATGCATTCTTCATTTCGCTACAGATCTTGAGGTGCGGGCCACCCCCCATGAACAAAGTTATGGCTGCTTACCTCAACAGCATTGGCTACACTTCCCAAATGCAGTTCCAGTTCTAA 1095 45.48 MATSLAHYHRPEFLTIAVAVVAIGVGTAYYFYITKKSKAKGCLDPDNFKEFKLVKRSQLSHNVAKFRFSLPTPTSVLGLPIGQHMSCRFYSLLNTRSFSDPRRSYVPFLKGKDSKGEDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKDIGFGIRYKGLWKKVQWTSGMGGSEGRFKYEPNEVEAFGMLAGGTGITPMFQVTRAILENPVDRTNVHLIYANVTYEDILLKEELDSLATRFPSRFTIYYVLNQPPEGWDGGIGFVTEEMIRQRCPAPSPNVRVGILIHSQLSISASFIFLSTSFYAKKKYAFFISLQILRCGPPPMNKVMAAYLNSIGYTSQMQFQF 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48074655 48078193 - Maker00001472 Lcy8g2198 641090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g2198 364 FunFam NADH-cytochrome b5 reductase 187 304 - -
Lcy8g2198 364 FunFam NADH-cytochrome b5 reductase 41 162 - -
Lcy8g2198 364 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 172 IPR017927 GO:0016491(InterPro)
Lcy8g2198 364 Pfam Oxidoreductase NAD-binding domain 206 295 IPR001433 GO:0016491(InterPro)
Lcy8g2198 364 PANTHER NADH-CYTOCHROME B5 REDUCTASE 18 364 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lcy8g2198 364 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 190 299 IPR039261 -
Lcy8g2198 364 SUPERFAMILY Riboflavin synthase domain-like 42 166 IPR017938 -
Lcy8g2198 364 Pfam Oxidoreductase FAD-binding domain 51 93 IPR008333 -
Lcy8g2198 364 Pfam Oxidoreductase FAD-binding domain 112 166 IPR008333 -
Lcy8g2198 364 Gene3D - 189 364 IPR039261 -
Lcy8g2198 364 Gene3D Translation factors 38 165 - -
Lcy8g2198 364 CDD cyt_b5_reduct_like 51 364 - -
Lcy8g2198 364 PRINTS Cytochrome B5 reductase signature 103 110 - -
Lcy8g2198 364 PRINTS Cytochrome B5 reductase signature 243 254 - -
Lcy8g2198 364 PRINTS Cytochrome B5 reductase signature 77 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1745 Lcy-Chr1:18443871 Lcy8g2198 Lcy-Chr8:48074655 1.25E-64 dispersed
Lcy4g2124 Lcy-Chr4:47774141 Lcy8g2198 Lcy-Chr8:48074655 1.03E-50 dispersed
Lcy8g2198 Lcy-Chr8:48074655 Lcy9g1590 Lcy-Chr9:41108148 6.55E-37 dispersed
Lcy8g2198 Lcy-Chr8:48074655 Lcy5g0764 Lcy-Chr5:11200692 1.04E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g2198 K00326 - csv:101219272 470.7