Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g0003 | ATGCCAGCTCTAAGAATTCTGTCTGATTGCTGGCCTTTTATACCATATGTGATGGTATTGGGTGGCTCTGGAGTTGGTGGCAAATTTCAGATCTTTTTGTGCTTGTTCTCGTACTGCATTCTTACTGAAATTTCTCACGCAGCAGTACTCTCTATGGATGAGTCTGTATTAGATGTAGATCAAGTGGAAAATCTTATCGAATTTTTCCCCACCAAAGAGGAGATAGAGCTTCTCAAGGGATACTGTGGTGACAAGGATAAACTTGGAATGTGTGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTAGAGTCGAAGTTAAGAGTGTTCTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAGAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTTGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCTAGGGTTAGTCTTGAAGGTTTAGGATTGCTTTATAAGTTCCATAGATCTGTTGTCACTCCCGATAGGTGTAAGGTGATAGGATCTTTTGCAGTTGCTGTACAATTGCTGCCAAGTGATGACCGACAAAGGTGTTCTCAACCCAATTTCTGTACTTTTGAATATGGTTTTGGGGTCATTGTAAGGAGAGAAAGCGTTTTTGAACTTCACCACATCCATGGCTACATCCCAGTTTTGTGGTATTCATCACATCCATGGTATGGAAGCTCTGGTCTGCCTCTCATTAAATATTGA | 780 | 40.64 | MPALRILSDCWPFIPYVMVLGGSGVGGKFQIFLCLFSYCILTEISHAAVLSMDESVLDVDQVENLIEFFPTKEEIELLKGYCGDKDKLGMCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFRKSLNTVNSVCQEVKNSCKLKEILKRILCLGNMLNQGTARVSLEGLGLLYKFHRSVVTPDRCKVIGSFAVAVQLLPSDDRQRCSQPNFCTFEYGFGVIVRRESVFELHHIHGYIPVLWYSSHPWYGSSGLPLIKY | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 97149 | 102023 | + | Maker00025457 | Lcy9g0003 | 641119 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g0003 | 259 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1 | 259 | IPR015425 | - | |
| Lcy9g0003 | 259 | PANTHER | FORMIN-J | 47 | 170 | IPR051144 | - | |
| Lcy9g0003 | 259 | Pfam | Formin Homology 2 Domain | 47 | 165 | IPR015425 | - | |
| Lcy9g0003 | 259 | Gene3D | Formin, FH2 domain | 28 | 174 | IPR042201 | - | |
| Lcy9g0003 | 259 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 47 | 170 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g0011 | Lcy-Chr4:196884 | Lcy9g0003 | Lcy-Chr9:97149 | 4.54E-153 | dispersed | |
| Lcy8g2223 | Lcy-Chr8:48384138 | Lcy9g0003 | Lcy-Chr9:97149 | 3.60E-79 | dispersed | |
| Lcy8g2224 | Lcy-Chr8:48457138 | Lcy9g0003 | Lcy-Chr9:97149 | 8.15E-67 | dispersed | |
| Lcy9g0003 | Lcy-Chr9:97149 | Lcy9g1889 | Lcy-Chr9:43958041 | 2.31E-36 | dispersed | |
| Lcy9g0002 | Lcy-Chr9:11711 | Lcy9g0003 | Lcy-Chr9:97149 | 6.37E-131 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g0003 | K28090 | - | csv:101221127 | 217.238 |