Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0066 | ATGCAATCGACAACTGGTGGTGCTACTGGTAGTTGCACCAGCGCCAGCGGCGGCGGCGGTGGCGGTGGAAGTGGACTCGCTCGGTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCCACTTAAGCCCAATCAGTGCTTGACTCAGCTTCTCGCCGGGACCTCTGCGCCGGATCAGGGCTTGTTCGAGCCCAATCCCTCCGCCGCCTTCCAAAGGCAGAATAGTTCTCCGGCGGAGTTTCTCGCCGCCTCTGGAATTGGGGACGGATTTTACTCTAACTATGCTATCAATTCCTCATCCAGTCTCGAGATCTCTCCCACCTCCAAGCGGGCCAGAGAAGTCGAGGCCCAAAACTTCCCGGCCAAATTTTCACCTCAGCTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAGATGGAGAAGCTATTGGAGGACTCTGTGCCTTGCCGGGTGAGGGCCAAACGTGGCTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGGAGGACTAAAATTAGTGATAGAATAAGGAAGCTTCAGGAGGTCGTCCCCAACATGGATAAGCAGACGAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATACCTTCAAAAGCAGATTCAGGAACTCACTGAGCATCAGCGCAGGTGCAAATGCATGGTTAAGGAATAA | 717 | 53.84 | MQSTTGGATGSCTSASGGGGGGGSGLARFRSAPAAWLEALLEDEEEDPLKPNQCLTQLLAGTSAPDQGLFEPNPSAAFQRQNSSPAEFLAASGIGDGFYSNYAINSSSSLEISPTSKRAREVEAQNFPAKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKYLQKQIQELTEHQRRCKCMVKE | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1309758 | 1313230 | + | Maker00020993 | Lcy9g0066 | 641182 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0066 | 238 | Gene3D | - | 169 | 238 | IPR036638 | GO:0046983(InterPro) | |
Lcy9g0066 | 238 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lcy9g0066 | 238 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 57 | 231 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Lcy9g0066 | 238 | SMART | finulus | 174 | 224 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g0066 | 238 | CDD | bHLH_AtbHLH_like | 173 | 225 | IPR045239 | - | |
Lcy9g0066 | 238 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 171 | 235 | IPR036638 | GO:0046983(InterPro) | |
Lcy9g0066 | 238 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Lcy9g0066 | 238 | Coils | Coil | 208 | 228 | - | - | |
Lcy9g0066 | 238 | FunFam | Transcription factor bHLH130 family | 169 | 237 | - | - | |
Lcy9g0066 | 238 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 168 | 218 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g0066 | 238 | Pfam | Helix-loop-helix DNA-binding domain | 174 | 219 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g1928 | Lcy-Chr3:46477058 | Lcy9g0066 | Lcy-Chr9:1309758 | 5.90E-15 | dispersed | |
Lcy9g0066 | Lcy-Chr9:1309758 | Lcy9g2004 | Lcy-Chr9:44925824 | 2.10E-11 | dispersed | |
Lcy9g0066 | Lcy-Chr9:1309758 | Lcy8g2110 | Lcy-Chr8:47286763 | 2.49E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20607 | None | None | None | None | Lcy | TF |
Pathway information
