Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0066 ATGCAATCGACAACTGGTGGTGCTACTGGTAGTTGCACCAGCGCCAGCGGCGGCGGCGGTGGCGGTGGAAGTGGACTCGCTCGGTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCCACTTAAGCCCAATCAGTGCTTGACTCAGCTTCTCGCCGGGACCTCTGCGCCGGATCAGGGCTTGTTCGAGCCCAATCCCTCCGCCGCCTTCCAAAGGCAGAATAGTTCTCCGGCGGAGTTTCTCGCCGCCTCTGGAATTGGGGACGGATTTTACTCTAACTATGCTATCAATTCCTCATCCAGTCTCGAGATCTCTCCCACCTCCAAGCGGGCCAGAGAAGTCGAGGCCCAAAACTTCCCGGCCAAATTTTCACCTCAGCTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAGATGGAGAAGCTATTGGAGGACTCTGTGCCTTGCCGGGTGAGGGCCAAACGTGGCTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGGAGGACTAAAATTAGTGATAGAATAAGGAAGCTTCAGGAGGTCGTCCCCAACATGGATAAGCAGACGAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATACCTTCAAAAGCAGATTCAGGAACTCACTGAGCATCAGCGCAGGTGCAAATGCATGGTTAAGGAATAA 717 53.84 MQSTTGGATGSCTSASGGGGGGGSGLARFRSAPAAWLEALLEDEEEDPLKPNQCLTQLLAGTSAPDQGLFEPNPSAAFQRQNSSPAEFLAASGIGDGFYSNYAINSSSSLEISPTSKRAREVEAQNFPAKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKYLQKQIQELTEHQRRCKCMVKE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1309758 1313230 + Maker00020993 Lcy9g0066 641182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0066 238 Gene3D - 169 238 IPR036638 GO:0046983(InterPro)
Lcy9g0066 238 MobiDBLite consensus disorder prediction 1 26 - -
Lcy9g0066 238 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 231 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy9g0066 238 SMART finulus 174 224 IPR011598 GO:0046983(InterPro)
Lcy9g0066 238 CDD bHLH_AtbHLH_like 173 225 IPR045239 -
Lcy9g0066 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 235 IPR036638 GO:0046983(InterPro)
Lcy9g0066 238 MobiDBLite consensus disorder prediction 1 18 - -
Lcy9g0066 238 Coils Coil 208 228 - -
Lcy9g0066 238 FunFam Transcription factor bHLH130 family 169 237 - -
Lcy9g0066 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983(InterPro)
Lcy9g0066 238 Pfam Helix-loop-helix DNA-binding domain 174 219 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1928 Lcy-Chr3:46477058 Lcy9g0066 Lcy-Chr9:1309758 5.90E-15 dispersed
Lcy9g0066 Lcy-Chr9:1309758 Lcy9g2004 Lcy-Chr9:44925824 2.10E-11 dispersed
Lcy9g0066 Lcy-Chr9:1309758 Lcy8g2110 Lcy-Chr8:47286763 2.49E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20607 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0066 - - - 0.0