Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0103 ATGGTGAACGGCCAAGCTCCTTTGATTGTTGGTGTTATCACAATTTATGCTTTGTTTTCAATGTTTGCTTACAAACCCATGGCTGAAGCTGATGATCAAAATCGCAAGGTTTACATCGTTTACCTTGGAGAAAGGCAATACGAAGATAGTAAATTGACAACTGAATCTCACCATGATTTACTGGCCACTGTATTGGGAAGCAAAGAGAAGTCGTCGGAATCAATGGTGTACAGTTATAGACATGGTTTTTCTGGGTTAGCAGCCAAGCTGACTAAGTCTCAAGCTCAAAAGCTAGCTGAAATGCCTGGGGTGGTTCGAGTTCTTCCAAATTCGTTTTACAAAATGCAGACGACAAGAAGTTGGGATTTTCTTGGACTCTCCTCCTCTCCCTCTAACTCTAATCTTCTCCGTCGCGGTAAAATGGGCGACGGTATCATTATAGGTGTCATTGATTCAGGAATTTGGCCAGAGTCCGAAGCATTTAGAGACAATGGGCTGGGGCCAATCCCATCAAGATGGAAAGGCAGATGTGAATCAGGAGCAGAATTCAACTCTACAAATTGCAACAGAAAAATCATAGGTGCACGTTGGTACTCGAAGGGCTTCATCGACAATTATGGGGCAGAGGCACTGGCCAACGAATACTTGTCCCCACGAGATGCCAACGGACATGGAACCCACGTCGCCAGCACAGCCGCAGGTTCGTTCGTAACAAACATCGGCTACCACGGCCTTGGCATTGGCACGGTGAGGGGTGGTGCACCACTCGCTCGGTTGGCTATATACAAGGTCTTGTGGACCAACAGCGGCCAGGGGTCAATAGCGGACATATTGCTTGCCATAGACGAGGCCATTCACGACGGTGTGGATGTGTTATCGATGTCGATTGTAGGTTCGATTCCATCGCTTCCCGAGTTCGATGAACTTCATGGCGGAGTTGCAATTGGTTTGTTTCATGCCATTGCGAGGGGGATTTCTGTGGTGTGTGCTGGTGGAAATGATGGCCCTCTTCAGCAGACCATGGAGAACACTGCGCCTTGGATTTTGACTGTGGCTGCGAGTACCATGGATAGAGCTTTTCTTGCCTCCATTGCTCTTGGAGATAACACCACTTATTTGGGCCAAAGCTTGTTCTCTGCAAAAAAGGACGTTGTCGGCCAGTTGGTGTTACCGCCGACTACAAGATCCTTACATATCGACGTCTTATATTGGATATATTACATTGGGGGCAGATGTGATGGCATTTTTGGAAATGAAACTTTCTTGAGTGGGAAGGTGGTTCTCTGCTTCTCTGATGGAGTCGCTACGAAGACTATATTTGAGACAGTGGCGGTGGCCGTGATGGCGGTGGCAAAAGCAAAAGGGAGGGGGATAATTGTCGCCGGCCAACAAAACGATAACTTGTTACCCTTTGCGATTCCATGCATCCTCGTGGATTCCGATGTTGGCACAAAATTGTACTTTTATGCCTTGCACAACAGTAATCCCGTCGTAAGGTTGAGGCAAGCAAGAACCATCATCGGCAAACCTATATCATCCAAGATAGCCTATTTCTCATCTCGAGGTCCAAATTCTGTTTCGCCCGCAATTCTCAAGCCGGACATAGCGGCTCCTGGATCGAACATTGTAGCCGCCATTTCACCCCACAACAGTTTTAGCTACAAAGGGTTTGCAATGCAATCAGGAACTTCCATGGCCGCACCTCATATCTCTGGCATTGTCGCTCTTCTTAAATCCCTGCATCCCACTTGGTCACCCGCTGCCATTAAATCAGCCCTCATCACCACTGCGAGTGCAAAGGACCCCTCTGGATTGCCCATTTTTGCTGAGGGCTCTCCTCCTAAAGTTGCTGACCCATTCGACTACGGTGGTGGAGTGGTGAACCCCAACGCTGCCGCTGACCCAGGCCTCATCTACGATTTGGACACCACAGATTACATATATTACCTCTGTGCCATGGGTTATCAGGACTCGGAAATTTCTTCCATAACGGGACAAAAAAGAAAGTGCCCGTTGCAAAAGCCCTCAGTGTTGGATTTAAATTTGCCGACCATTACAATACCTGCACTCACGAACTCCACCACCGTGACTCGAACTGTGACAAATGTAGGGAACTTGACCTCCGTTTATAGGGCAGTGATCGACCCTCCACCCGGAACCAAGGTGAGTGTTGAGCCTTCGAAGTTGGCTTTTAGTTCCCAAGTGAAGAAGATTTCCTTTAAGGTTACAATTTCCACTGCGGTCTATAGAAACTACGGCTACTCTTTTGGAACCTTAACATGGAGCGATGGAGTGCATCTTGTCCAAAGTCCTTTGTCTGTGCGAATTAATTTCCTTTGA 2340 47.69 MVNGQAPLIVGVITIYALFSMFAYKPMAEADDQNRKVYIVYLGERQYEDSKLTTESHHDLLATVLGSKEKSSESMVYSYRHGFSGLAAKLTKSQAQKLAEMPGVVRVLPNSFYKMQTTRSWDFLGLSSSPSNSNLLRRGKMGDGIIIGVIDSGIWPESEAFRDNGLGPIPSRWKGRCESGAEFNSTNCNRKIIGARWYSKGFIDNYGAEALANEYLSPRDANGHGTHVASTAAGSFVTNIGYHGLGIGTVRGGAPLARLAIYKVLWTNSGQGSIADILLAIDEAIHDGVDVLSMSIVGSIPSLPEFDELHGGVAIGLFHAIARGISVVCAGGNDGPLQQTMENTAPWILTVAASTMDRAFLASIALGDNTTYLGQSLFSAKKDVVGQLVLPPTTRSLHIDVLYWIYYIGGRCDGIFGNETFLSGKVVLCFSDGVATKTIFETVAVAVMAVAKAKGRGIIVAGQQNDNLLPFAIPCILVDSDVGTKLYFYALHNSNPVVRLRQARTIIGKPISSKIAYFSSRGPNSVSPAILKPDIAAPGSNIVAAISPHNSFSYKGFAMQSGTSMAAPHISGIVALLKSLHPTWSPAAIKSALITTASAKDPSGLPIFAEGSPPKVADPFDYGGGVVNPNAAADPGLIYDLDTTDYIYYLCAMGYQDSEISSITGQKRKCPLQKPSVLDLNLPTITIPALTNSTTVTRTVTNVGNLTSVYRAVIDPPPGTKVSVEPSKLAFSSQVKKISFKVTISTAVYRNYGYSFGTLTWSDGVHLVQSPLSVRINFL 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2228919 2235163 + Maker00021078 Lcy9g0103 641219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0103 779 SUPERFAMILY Subtilisin-like 31 705 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy9g0103 779 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 116 IPR037045 -
Lcy9g0103 779 ProSiteProfiles Serine proteases, subtilase domain profile. 120 633 - -
Lcy9g0103 779 CDD PA_subtilisin_like 366 500 - -
Lcy9g0103 779 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Lcy9g0103 779 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Lcy9g0103 779 PRINTS Subtilisin serine protease family (S8) signature 561 577 IPR015500 -
Lcy9g0103 779 FunFam Subtilisin-like protease SBT1.5 650 777 - -
Lcy9g0103 779 FunFam Subtilisin-like protease SBT5.3 27 116 - -
Lcy9g0103 779 Gene3D - 357 507 - -
Lcy9g0103 779 ProSitePatterns Serine proteases, subtilase family, histidine active site. 224 234 IPR022398 -
Lcy9g0103 779 Pfam Fibronectin type-III domain 679 774 IPR041469 -
Lcy9g0103 779 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 37 771 IPR045051 -
Lcy9g0103 779 Pfam Peptidase inhibitor I9 37 115 IPR010259 -
Lcy9g0103 779 ProSitePatterns Serine proteases, subtilase family, serine active site. 562 572 IPR023828 -
Lcy9g0103 779 Gene3D Peptidase S8/S53 domain 144 646 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy9g0103 779 Gene3D - 650 777 - -
Lcy9g0103 779 CDD Peptidases_S8_3 113 598 IPR034197 -
Lcy9g0103 779 FunFam Subtilisin-like protease SBT1.5 144 368 - -
Lcy9g0103 779 Pfam Subtilase family 142 600 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0872 Lcy-Chr6:8834594 Lcy9g0103 Lcy-Chr9:2228919 0 dispersed
Lcy6g0873 Lcy-Chr6:8843199 Lcy9g0103 Lcy-Chr9:2228919 2.26E-34 dispersed
Lcy6g0877 Lcy-Chr6:8918815 Lcy9g0103 Lcy-Chr9:2228919 0 dispersed
Lcy6g0878 Lcy-Chr6:8957662 Lcy9g0103 Lcy-Chr9:2228919 0 dispersed
Lcy6g0879 Lcy-Chr6:8974612 Lcy9g0103 Lcy-Chr9:2228919 0 dispersed
Lcy9g0103 Lcy-Chr9:2228919 Lcy9g2281 Lcy-Chr9:47238638 4.03E-146 dispersed
Lcy1g0084 Lcy-Chr1:759801 Lcy9g0103 Lcy-Chr9:2228919 3.29E-91 transposed
Lcy5g1477 Lcy-Chr5:35427627 Lcy9g0103 Lcy-Chr9:2228919 3.81E-92 transposed
Lcy6g0020 Lcy-Chr6:268963 Lcy9g0103 Lcy-Chr9:2228919 9.95E-257 transposed
Lcy8g1867 Lcy-Chr8:44993371 Lcy9g0103 Lcy-Chr9:2228919 2.47E-166 transposed
Lcy5g1287 Lcy-Chr5:30434562 Lcy9g0103 Lcy-Chr9:2228919 4.33E-102 wgd
Lcy9g0103 Lcy-Chr9:2228919 Lcy9g0404 Lcy-Chr9:11378610 4.81E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0103 - - - 0.0