Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0129 ATGGGCTGCATTTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAGTCACAAAGAGTCTGAAATTGAAAAAGATTTGAACAAATCTTCAGTTCAGTTGGTTGCTCCGTCTCCCTCAAAAGGAGAGGACTTGTTGTTAGAGATTCAATTGTCAAGGCAGGCATCTAAAATAAATGGGGGTTCTGTTCATAAAACAAAGGCAAATGGAGGGTCTGTCCATCGACCAAAGGAGGATGATGAATCTGTGAATAAATCCCTAAAGGCTACAAAATCAAATAATGATAATGCTTCAGCAGGTAGAAAACAGCCCGACTTTTTTAGGTTTGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACATGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGTCGTGCTGACTCCTTTGAGAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACGGGTAAAACTGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCCTGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGTAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCAGGCCTTGCTGCAGCTCCTGGACATAAGTTTACTGAGGCTCAGATTAAATGTTACGTGCAACAATTGTTTCATGGACTCGAACATTGTCATAGTCGGGGAGTTTTGCACCGGGATATCAAAGGTTCAAATCTTCTCATTGACAATAATGGTGTGCTCAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGTCCGATCAAAAGCAGCCATTGACAAGTCGTGTAGTGACATTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACTGAATATGGACCCGCCATAGATCTCTGGAGCTGTGGCTGTATTGTTGCCGAACTATTTGCTGGAAAACCTATTATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCGGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACTTTTAAAAGCTTCCCTTCTTCAGCTCTGGCTCTTGTTACTAAACTACTTGCTATTGAACCAGAGCACAGAGGATCGGCTACTTTAGCTCTCAGAAGTGAGGTTTTGCAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCGAAATATCCTCCGAGCAAGGAATTTGATGCCAAGCTGCGAAATGAAGAAGAAAGAAAGAAAAAAGCCGAAGCTGTGAAGGGACGTCATCCCGAATCTGTAAGAAGGGGCTCAAGAGACACCAAGGCAGTTCCAACTCCCGAATTCAGTGCTCAAGGAGACATCACGATAAAGGTACACCCGATCGCGAAAAAGACGAATACTAAGTACATCCCTCAAGAGGACAGTGAGCCTTCGAGAGTTGTGCAAAGTCGATTTGCCCACTCAACGTCTATGGTGCACCCAAGCATTGCAGGTTCATGGAGTAAGCCTACCGGAGCCTCGAGAAATTTTGTAGAGTTAAAGACACAGAAATCTCAGATGCATCAGTTAGTGGCAGATTTGTCAGCCTCTTCTCTCAAGAAGGAAGACTCAGTGTCTGCTAAAGATCCTGGAATGGGTTATGTTCAAAAGAAGAACCGAATACATTACTCGGGACCGTTAGTGCCTCCAGGAGGAACCATTGAAGAGATGCTGAAAGAGCACGAGAGACAAATCCAGCAAGCTTTTCGAAAGGCACGAATCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGCTTTGA 1944 44.44 MGCICSRDSSEPEDSSHKESEIEKDLNKSSVQLVAPSPSKGEDLLLEIQLSRQASKINGGSVHKTKANGGSVHRPKEDDESVNKSLKATKSNNDNASAGRKQPDFFRFASLSKGAEAEHVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKTVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLFHGLEHCHSRGVLHRDIKGSNLLIDNNGVLKIGDFGLATFFQSDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVTKLLAIEPEHRGSATLALRSEVLQFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFSAQGDITIKVHPIAKKTNTKYIPQEDSEPSRVVQSRFAHSTSMVHPSIAGSWSKPTGASRNFVELKTQKSQMHQLVADLSASSLKKEDSVSAKDPGMGYVQKKNRIHYSGPLVPPGGTIEEMLKEHERQIQQAFRKARIDKAKTNKSYGDQL 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2818138 2823957 - Maker00020913 Lcy9g0129 641245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0129 647 MobiDBLite consensus disorder prediction 463 488 - -
Lcy9g0129 647 MobiDBLite consensus disorder prediction 463 493 - -
Lcy9g0129 647 MobiDBLite consensus disorder prediction 10 26 - -
Lcy9g0129 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g0129 647 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524(InterPro)
Lcy9g0129 647 SMART serkin_6 147 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0129 647 CDD STKc_CDK9_like 147 434 - -
Lcy9g0129 647 Pfam Protein kinase domain 147 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0129 647 SUPERFAMILY Protein kinase-like (PK-like) 140 431 IPR011009 -
Lcy9g0129 647 Gene3D Transferase(Phosphotransferase) domain 1 230 474 - -
Lcy9g0129 647 Coils Coil 452 472 - -
Lcy9g0129 647 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Lcy9g0129 647 PANTHER CELL DIVISION PROTEIN KINASE 146 430 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy9g0129 647 Coils Coil 618 638 - -
Lcy9g0129 647 MobiDBLite consensus disorder prediction 70 85 - -
Lcy9g0129 647 FunFam probable serine/threonine-protein kinase At1g54610 230 474 - -
Lcy9g0129 647 FunFam probable serine/threonine-protein kinase At1g54610 134 229 - -
Lcy9g0129 647 MobiDBLite consensus disorder prediction 1 35 - -
Lcy9g0129 647 ProSiteProfiles Protein kinase domain profile. 147 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0129 647 MobiDBLite consensus disorder prediction 56 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1705 Lcy-Chr13:36024367 Lcy9g0129 Lcy-Chr9:2818138 7.44E-73 dispersed
Lcy8g1543 Lcy-Chr8:42059683 Lcy9g0129 Lcy-Chr9:2818138 1.34E-173 dispersed
Lcy8g1544 Lcy-Chr8:42067045 Lcy9g0129 Lcy-Chr9:2818138 2.01E-181 dispersed
Lcy8g1622 Lcy-Chr8:42791873 Lcy9g0129 Lcy-Chr9:2818138 6.93E-36 dispersed
Lcy8g2188 Lcy-Chr8:47937030 Lcy9g0129 Lcy-Chr9:2818138 1.87E-71 dispersed
Lcy9g0129 Lcy-Chr9:2818138 Lcy9g0607 Lcy-Chr9:20148016 1.30E-142 dispersed
Lcy9g0129 Lcy-Chr9:2818138 Lcy7g1665 Lcy-Chr7:32912490 1.07E-206 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66164 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0129 K08819 - csv:101208709 1160.21