Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0152 ATGGACAAGGCGTCGTTGCTCGGCGATGCCGTTTCGTACATCAACGAGCTGAAATCGAAGCTCCAAATCGCGAAATTGGAGAAGACGAAGATGGGAAAACAGCTGGAGTTTCTGAAGAAGGACATGGGAGGGAAAGATCTCGGAAACTACACGAACCCCATCGATCAAGATCTGAAAATCGGGAACAGAAAGGCGATGGAGATCGAGATCGACGTGAAAATCATGGGTTGGGACGCGATGATCAGAATCCAGTGCAGTAAAAAGAATCACCCGACGGCGAGATTGATGCCGGCGTTGAAGGATTTGGATTTGGAAATGGTTCACGCCAGCGTTTCTGTGGTGAACGATCTGATGATTCAACAGGCAGCCGTGAAGATGGGAAGCAGATTTTACACACAGGAGCAGCTGAAAATGGCCCTCGTGGCCCGCGACGGCGGCGGCGACCATGGAATGATGTACAGAAGAACAGGGGTTGTGTAA 480 50.62 MDKASLLGDAVSYINELKSKLQIAKLEKTKMGKQLEFLKKDMGGKDLGNYTNPIDQDLKIGNRKAMEIEIDVKIMGWDAMIRIQCSKKNHPTARLMPALKDLDLEMVHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALVARDGGGDHGMMYRRTGVV 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3319542 3320021 + Maker00020996 Lcy9g0152 641268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0152 159 Pfam Plant bHLH transcription factor, ACT-like domain 70 139 IPR054502 -
Lcy9g0152 159 Coils Coil 14 34 - -
Lcy9g0152 159 PANTHER MYC 1 143 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2225 Lcy-Chr6:46675617 Lcy9g0152 Lcy-Chr9:3319542 2.77E-88 dispersed
Lcy9g0152 Lcy-Chr9:3319542 Lcy1g1497 Lcy-Chr1:14691901 1.90E-21 dispersed
Lcy4g1409 Lcy-Chr4:34851813 Lcy9g0152 Lcy-Chr9:3319542 9.95E-18 wgd
Lcy4g1104 Lcy-Chr4:21769977 Lcy9g0152 Lcy-Chr9:3319542 2.40E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0152 K13422 - csv:101205372 242.276