Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0177 | ATGGGGAGCCATGGCGCTGCGACGTCGAGCTATCGAGGGGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCCGAGATTCGCGAGCCGGGGAAGAAGACGAGGATATGGTTGGGGAGCTTCGAGACCCCGGAGATGGCGGCGGCGGCCTACGATGTCGCTGCCTACCACTTCCGCGGTCGCGATGCCCGCCTCAACTTCCCACATCTTGTCAATTCTCTTCCCTTTCCTCTTGGCTCCAGTGCTGATGATATCCGCCTCGCTGCCCATGAGGCGGCGTTGCGGCTACGAACGACACCCGCCGTTGTGTCTGAGGGTGGTGGAACTTCTGGCTCGGGGTTGGCCCCGGTCACCGTGCGGCTATCCCCGAGCCAAATTCAGGCGATCAACGAGTCGCCGTTGGACTCGCCAAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTGATGGAGGAGTATTCAAATGCCACTGTGTTTGCCGATGACATGAACGATGAGATGTGGGAGAATATGCACAATGATTCCCTGTGGGATCCTTAG | 537 | 58.29 | MGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLGSSADDIRLAAHEAALRLRTTPAVVSEGGGTSGSGLAPVTVRLSPSQIQAINESPLDSPKMWMQMSSESLLMEEYSNATVFADDMNDEMWENMHNDSLWDP | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 4107878 | 4108414 | + | Maker00020983 | Lcy9g0177 | 641293 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0177 | 178 | SUPERFAMILY | DNA-binding domain | 9 | 68 | IPR016177 | GO:0003677(InterPro) | |
Lcy9g0177 | 178 | CDD | AP2 | 9 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0177 | 178 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 9 | 137 | IPR051032 | - | |
Lcy9g0177 | 178 | FunFam | Ethylene-responsive transcription factor 2 | 9 | 68 | - | - | |
Lcy9g0177 | 178 | ProSiteProfiles | AP2/ERF domain profile. | 10 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0177 | 178 | Pfam | AP2 domain | 10 | 59 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0177 | 178 | Gene3D | AP2/ERF domain | 10 | 69 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0177 | 178 | SMART | rav1_2 | 10 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0177 | 178 | PRINTS | Ethylene responsive element binding protein signature | 33 | 49 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0177 | 178 | PRINTS | Ethylene responsive element binding protein signature | 11 | 22 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g0167 | Lcy-Chr9:3748886 | Lcy9g0177 | Lcy-Chr9:4107878 | 2.71E-30 | dispersed | |
Lcy9g0177 | Lcy-Chr9:4107878 | Lcy9g0226 | Lcy-Chr9:5644019 | 2.48E-64 | dispersed | |
Lcy4g0942 | Lcy-Chr4:15461480 | Lcy9g0177 | Lcy-Chr9:4107878 | 9.15E-28 | wgd | |
Lcy8g0282 | Lcy-Chr8:8538838 | Lcy9g0177 | Lcy-Chr9:4107878 | 2.16E-20 | wgd | |
Lcy9g0177 | Lcy-Chr9:4107878 | Lcy9g0379 | Lcy-Chr9:10585394 | 1.69E-30 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20614 | None | None | None | None | Lcy | TF |
Pathway information
