Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0177 ATGGGGAGCCATGGCGCTGCGACGTCGAGCTATCGAGGGGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCCGAGATTCGCGAGCCGGGGAAGAAGACGAGGATATGGTTGGGGAGCTTCGAGACCCCGGAGATGGCGGCGGCGGCCTACGATGTCGCTGCCTACCACTTCCGCGGTCGCGATGCCCGCCTCAACTTCCCACATCTTGTCAATTCTCTTCCCTTTCCTCTTGGCTCCAGTGCTGATGATATCCGCCTCGCTGCCCATGAGGCGGCGTTGCGGCTACGAACGACACCCGCCGTTGTGTCTGAGGGTGGTGGAACTTCTGGCTCGGGGTTGGCCCCGGTCACCGTGCGGCTATCCCCGAGCCAAATTCAGGCGATCAACGAGTCGCCGTTGGACTCGCCAAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTGATGGAGGAGTATTCAAATGCCACTGTGTTTGCCGATGACATGAACGATGAGATGTGGGAGAATATGCACAATGATTCCCTGTGGGATCCTTAG 537 58.29 MGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLGSSADDIRLAAHEAALRLRTTPAVVSEGGGTSGSGLAPVTVRLSPSQIQAINESPLDSPKMWMQMSSESLLMEEYSNATVFADDMNDEMWENMHNDSLWDP 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4107878 4108414 + Maker00020983 Lcy9g0177 641293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0177 178 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677(InterPro)
Lcy9g0177 178 CDD AP2 9 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0177 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 137 IPR051032 -
Lcy9g0177 178 FunFam Ethylene-responsive transcription factor 2 9 68 - -
Lcy9g0177 178 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0177 178 Pfam AP2 domain 10 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0177 178 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0177 178 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0177 178 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0177 178 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0167 Lcy-Chr9:3748886 Lcy9g0177 Lcy-Chr9:4107878 2.71E-30 dispersed
Lcy9g0177 Lcy-Chr9:4107878 Lcy9g0226 Lcy-Chr9:5644019 2.48E-64 dispersed
Lcy4g0942 Lcy-Chr4:15461480 Lcy9g0177 Lcy-Chr9:4107878 9.15E-28 wgd
Lcy8g0282 Lcy-Chr8:8538838 Lcy9g0177 Lcy-Chr9:4107878 2.16E-20 wgd
Lcy9g0177 Lcy-Chr9:4107878 Lcy9g0379 Lcy-Chr9:10585394 1.69E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20614 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0177 - - - 0.0