Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0226 | ATGGAACCCACCACTTACAGAGGCGTCCGCAAGCGCAAATGGGGCAAATGGGTCTCCGAAATCCGCGAACCCGGCAAGAAAACCCGAATCTGGCTCGGCAGTTACGACCTCCCTCAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCCGACCTCGCCGACACCTTCCCCCGCCCCGCCACTTCCTCCCCCGAGGACATTCAGACCGCCGCCCACATCGCTGCATTGCGGATGAGGATGCCGCCCGACTCCGCCGCCGCCGGCCCCGCGCCGGTCAGGATCGGCCTCTCCCCCAGCCAGATTCAGGCCATCAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTCTGTTTGGAGGAAGAGTCGTCTGGTTTCTTGTGCGATGGGTTTGATGATGAGTGGGAGGATAGCATGCAGATGCAGCATCATTCCATTTGGGATTATTCTTGA | 507 | 62.92 | MEPTTYRGVRKRKWGKWVSEIREPGKKTRIWLGSYDLPQMAAAAYDVAALHLRGPDARLNFPDLADTFPRPATSSPEDIQTAAHIAALRMRMPPDSAAAGPAPVRIGLSPSQIQAINESPLDSPTMWMQMAAEALCLEEESSGFLCDGFDDEWEDSMQMQHHSIWDYS | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5644019 | 5644525 | + | Maker00021458 | Lcy9g0226 | 641342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0226 | 168 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 4 | 111 | IPR051032 | - | |
Lcy9g0226 | 168 | FunFam | Ethylene-responsive transcription factor 2 | 4 | 63 | - | - | |
Lcy9g0226 | 168 | SMART | rav1_2 | 5 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0226 | 168 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0226 | 168 | SUPERFAMILY | DNA-binding domain | 5 | 63 | IPR016177 | GO:0003677(InterPro) | |
Lcy9g0226 | 168 | Pfam | AP2 domain | 6 | 54 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0226 | 168 | ProSiteProfiles | AP2/ERF domain profile. | 5 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0226 | 168 | Gene3D | AP2/ERF domain | 5 | 63 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0226 | 168 | PRINTS | Ethylene responsive element binding protein signature | 6 | 17 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0226 | 168 | PRINTS | Ethylene responsive element binding protein signature | 44 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g0177 | Lcy-Chr9:4107878 | Lcy9g0226 | Lcy-Chr9:5644019 | 2.48E-64 | dispersed | |
Lcy9g0226 | Lcy-Chr9:5644019 | Lcy9g1625 | Lcy-Chr9:41392249 | 5.49E-30 | dispersed | |
Lcy8g0773 | Lcy-Chr8:28362107 | Lcy9g0226 | Lcy-Chr9:5644019 | 6.93E-27 | wgd | |
Lcy8g0282 | Lcy-Chr8:8538838 | Lcy9g0226 | Lcy-Chr9:5644019 | 6.53E-19 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20615 | None | None | None | None | Lcy | TF |
Pathway information
