Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0226 ATGGAACCCACCACTTACAGAGGCGTCCGCAAGCGCAAATGGGGCAAATGGGTCTCCGAAATCCGCGAACCCGGCAAGAAAACCCGAATCTGGCTCGGCAGTTACGACCTCCCTCAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCCGACCTCGCCGACACCTTCCCCCGCCCCGCCACTTCCTCCCCCGAGGACATTCAGACCGCCGCCCACATCGCTGCATTGCGGATGAGGATGCCGCCCGACTCCGCCGCCGCCGGCCCCGCGCCGGTCAGGATCGGCCTCTCCCCCAGCCAGATTCAGGCCATCAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTCTGTTTGGAGGAAGAGTCGTCTGGTTTCTTGTGCGATGGGTTTGATGATGAGTGGGAGGATAGCATGCAGATGCAGCATCATTCCATTTGGGATTATTCTTGA 507 62.92 MEPTTYRGVRKRKWGKWVSEIREPGKKTRIWLGSYDLPQMAAAAYDVAALHLRGPDARLNFPDLADTFPRPATSSPEDIQTAAHIAALRMRMPPDSAAAGPAPVRIGLSPSQIQAINESPLDSPTMWMQMAAEALCLEEESSGFLCDGFDDEWEDSMQMQHHSIWDYS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5644019 5644525 + Maker00021458 Lcy9g0226 641342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0226 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 111 IPR051032 -
Lcy9g0226 168 FunFam Ethylene-responsive transcription factor 2 4 63 - -
Lcy9g0226 168 SMART rav1_2 5 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0226 168 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0226 168 SUPERFAMILY DNA-binding domain 5 63 IPR016177 GO:0003677(InterPro)
Lcy9g0226 168 Pfam AP2 domain 6 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0226 168 ProSiteProfiles AP2/ERF domain profile. 5 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0226 168 Gene3D AP2/ERF domain 5 63 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0226 168 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0226 168 PRINTS Ethylene responsive element binding protein signature 44 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0177 Lcy-Chr9:4107878 Lcy9g0226 Lcy-Chr9:5644019 2.48E-64 dispersed
Lcy9g0226 Lcy-Chr9:5644019 Lcy9g1625 Lcy-Chr9:41392249 5.49E-30 dispersed
Lcy8g0773 Lcy-Chr8:28362107 Lcy9g0226 Lcy-Chr9:5644019 6.93E-27 wgd
Lcy8g0282 Lcy-Chr8:8538838 Lcy9g0226 Lcy-Chr9:5644019 6.53E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20615 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0226 - - - 0.0