Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0348 ATGACGAGACCCACGACCATCCGCTTCAGATCTGCGGCTTCACGGCGAACGGACGACAGCTTCATGGCCATCCGTACTGTAGCGAAAATGGTTAACGAAGTGGTTGAGAATGGAGTAAGCGATATGGTAATTGATGGTAACGAACAAAAGCCGAAGAAAATTGTGCCTGATGGGTTCGATGCTAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTATACTGATTTTTTCAAATGGATGTCTTATGGAAATGATGGAAAGCATCCAGGCAGTGACCGATCCTATTTTGGCCGAAGAGAGTTCTCATTCACGTTGGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTTTGTCTGAAATGGAAAATTCGATCAAGGAAAAGTGTCCGTTTAAGATTGATATTGGGTCTGTATACAGCGTGGATCCTGCAAAGAGACACGCATATGCTGGTGATAATGTATTTACTCCACTGGAGAGAGAGCTTGTTTTTGATATAGATATGACCGATTATGATGATGTTAGATATTGTTGTTCAGGAGCTGATGTTTGCTTGGATTGCTGGCCTTTAATGACTGCTGCTATCAAAGTGATTGATACTACCCTCAGAGATGACTTTGGATTTAACCACATATTGTGGGTATTTAGTGGTCGACGTGGTGTTCACTGTTGGGTCTGTGATGGCAAAGCAAGAAGGTTGTCTAATGAACAGAGAGCTGCCATTTCTGAATATTTCCATTTATATCAGGGTAACGAAAATAGTCGCAAGAAAATTTCACTAACGAGTCCAGTTCTTCATCCATTTCTTGCGAGATCATACATAGACGTTCTCGAGGATTGCTTTGAATCAAAATTGCTTTGTAGTCAAAAAATTTTCTCAACTGAGGAGAGATATGAGAAAATCTTAGATATGATTCATGATGAATATACTAATAGAGTTGCCCCTGTAGCCATTACCTCAGAGCTTCGTGGAAGGTGGCAAGAGAATAGGCGACCCTCTAAAAAAGATGTTAATTCCGTAAGATGGGAGCAACTAAAAAATATGTTGCAATCAGGGAAACATAAGAGGGAAGAAGGGCAGACGGGATTGTCTGTTGATTTTGGGATTGCACCCTTGTCTTAG 1128 40.51 MTRPTTIRFRSAASRRTDDSFMAIRTVAKMVNEVVENGVSDMVIDGNEQKPKKIVPDGFDANYLKIYYGKLFPYTDFFKWMSYGNDGKHPGSDRSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGSVYSVDPAKRHAYAGDNVFTPLERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAISEYFHLYQGNENSRKKISLTSPVLHPFLARSYIDVLEDCFESKLLCSQKIFSTEERYEKILDMIHDEYTNRVAPVAITSELRGRWQENRRPSKKDVNSVRWEQLKNMLQSGKHKREEGQTGLSVDFGIAPLS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9464498 9471298 - Maker00004428 Lcy9g0348 641464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0348 375 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 65 351 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Lcy9g0348 375 Gene3D DNA primase, PRIM domain 53 369 - -
Lcy9g0348 375 CDD AE_Prim_S 73 278 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Lcy9g0348 375 SUPERFAMILY Prim-pol domain 61 318 - -
Lcy9g0348 375 PANTHER DNA PRIMASE SMALL SUBUNIT 62 359 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
Lcy9g0348 375 Pfam DNA primase small subunit 166 314 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2216 Lcy-Chr2:45770390 Lcy9g0348 Lcy-Chr9:9464498 7.00E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0348 K02684 - csv:101203146 600.512