Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0364 CTCTTCGCTGGTCGGGACGTTCTGTCCTCGACGATTCAAACGGGTTTCCGTCATTCTCTCGTTCGCTGTCTGTCTGAAGTAGACCGAACCCTCCATTTTCAGCTCATCCAGAAGCAGAAGCAGAAGCAGGATGATGAAGCTGCCGCGCTGGTTGTCCAGTGCACTGTTCCCTATGCGACTGAACGTTCTTTTGTTAGCTCGCATTTCTCTTTTATGGCAATGCTATTCATTATCATCCATTCTTTTCTTTGCTCTCCACTCGACAGTCTTCTAGGAAACAGTAATTCTGCTGATACTGATTCTATTTTCTACTCGTTTGTTTGTTTGTCTTTGGGGTCTGTAACACAAAGTGATTGCAAGCATAATGGAGAAGAAGACTTTGGACGGCACATGAGAGGTAGAATAAATGGCATTCATAGAAATCCCTGGGAGAGCATATCAAAACAGTGGAGGTTGGTGCAGTATCTTCCCTCTTCTAAATTGGCAATGGTAAAAGAGTTCTTGTTTTGGGAAGATGTATGGCTTGGTCATGGCTTTTCTTTCGAAACTATGGATGGAAGAATATTGAGAATCCTCAAGGATAAAGCTTCTTCCGCCATGGGTTCTCTGTCAGATGGCGGAGGAAGACCTCGATCATATTCTCTATCTGATGGCAGAGGAAGACCTCGATCAGATGTTGGGGGTGGCCTGGCCATGGGTTCATTCAAAAGGTTAAGGCACTTAAAGGACTTTTGGAAGAATGGAACTATGCCACCTTTGGAAAAATACCATGGTGGAAATCCTTTTTGGAAATGGTGTGAGCTTGGTGTCATAGACGATGATATTGAGACTAAATTTATCGATTTCTTTAAAGGGCTTTACATGAAGAATCGAGTCTTGCTATCATCTTTCTTCTCCACCATTCACGCCTTCAAAGAAGCCTTGGGCCTCCACATTAATCATAAGATGTTTGAGTTTATAGGCATCAATTTACCATTGGAAATCGTTGCCCTTGCCTCTGATTTTGGCAGTGACTTATGTGGGTCTCCTTCTTCATGGAAAGCCGTATACCATTTCTTTTGGGATCTTATTATTGAGAAGGTTGAGAGACGGCTAAAAGCAATGGTGGCAATTTTTGGGAAGAATTCCAGGAGTAACATCCTTCAGCTTTTATGTGGCCCTAATACTCTCTTCAAAGTTCAAAGCCAAGATGATTTGAATCAATGCAGTCACAGCCTTCCTCTAGAAGATTTGTGTCAGCTTCTGGAGATGACGGCGGCGTCGGCGACAGGTGCGATGAGGGAGATCGGCAGTGACGGGCGGAAAAAGATCTGGATCACATTCTTTGGAGTTGTGACTATGCGTGTTTTGTGTGGGGACCCTTTCTTTGATGCTTTTGGGATGCAGGTGCTGAGTTACCTGGATTATAGGGAGTTGATCGAGGAGTTCCTCCTTCATCCGCCTTTTCGAACCAACTATTTGTTCAAATTATGTGTAAGAAAGCTGGTCATGTTGGATATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAAAATTTTACTCATACAGGGCCAGCGTAGATTATTTAAGGAAAATCGAAGAGCGTCGAGGTGCTCTGGGCACAGTGTCTCGACTCTGTGCCCTCCACACTTCGGCTGGGAATTGACCTGCAGCAGCATCGAGACGCCCAAAGGATGGTGTCTCGACGTTGTGATCTCGGGAATGTTGGCTGTTGCAGTCACAAAGAATGCAAGTGACAGAGTTTATGCTAGTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGGTGCCTTGTCTGCCAACTTTCACTAAATTGGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTACTGCTGACATTCTTTCCTGCCATAGGCGAACGCAAGTATGACTGGACAAAGAAACAGTTTTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCTAGAGACTCTTGTGAATTCTATCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTTATCTCTTTGAATGTTGTTAATAACACACAACAAACCAAAGAATTCTTGAGTGTACCCTTCACAGCAGGCGAATTTTCTGTAATGAAGACAGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCAAACCTAGTCCTGGCATGGGAAAGGTTCTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 2313 44.19 LFAGRDVLSSTIQTGFRHSLVRCLSEVDRTLHFQLIQKQKQKQDDEAAALVVQCTVPYATERSFVSSHFSFMAMLFIIIHSFLCSPLDSLLGNSNSADTDSIFYSFVCLSLGSVTQSDCKHNGEEDFGRHMRGRINGIHRNPWESISKQWRLVQYLPSSKLAMVKEFLFWEDVWLGHGFSFETMDGRILRILKDKASSAMGSLSDGGGRPRSYSLSDGRGRPRSDVGGGLAMGSFKRLRHLKDFWKNGTMPPLEKYHGGNPFWKWCELGVIDDDIETKFIDFFKGLYMKNRVLLSSFFSTIHAFKEALGLHINHKMFEFIGINLPLEIVALASDFGSDLCGSPSSWKAVYHFFWDLIIEKVERRLKAMVAIFGKNSRSNILQLLCGPNTLFKVQSQDDLNQCSHSLPLEDLCQLLEMTAASATGAMREIGSDGRKKIWITFFGVVTMRVLCGDPFFDAFGMQVLSYLDYRELIEEFLLHPPFRTNYLFKLCVRKLVMLDILLGRILSHLELAFQILDKILLIQGQRRLFKENRRASRCSGHSVSTLCPPHFGWELTCSSIETPKGWCLDVVISGMLAVAVTKNASDRVYASYNVYKGKAGLSMVPCLPTFTKLESGSLVIDRRGSVLLTFFPAIGERKYDWTKKQFFALSPTEVGTLISLGPRDSCEFYHDPGMLSSTAGQVRKSLSIKAHADGNGYFISLNVVNNTQQTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSPGMGKVLQPNKVDREALSLEWER 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10101042 10116752 - Maker00004572 Lcy9g0364 641480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0364 770 MobiDBLite consensus disorder prediction 199 225 - -
Lcy9g0364 770 Gene3D Transcriptional Coactivator Pc4; Chain A 579 748 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy9g0364 770 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 581 770 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy9g0364 770 Pfam Whirly transcription factor 594 728 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy9g0364 770 SUPERFAMILY ssDNA-binding transcriptional regulator domain 585 769 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2306 Lcy-Chr13:41953445 Lcy9g0364 Lcy-Chr9:10101042 6.27E-37 dispersed
Lcy9g0364 Lcy-Chr9:10101042 Lcy4g0615 Lcy-Chr4:7352647 1.96E-09 dispersed
Lcy9g0364 Lcy-Chr9:10101042 Lcy9g0411 Lcy-Chr9:11494379 6.90E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20616 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0364 K26561 - csv:101219085 319.701