Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0364 CTCTTCGCTGGTCGGGACGTTCTGTCCTCGACGATTCAAACGGGTTTCCGTCATTCTCTCGTTCGCTGTCTGTCTGAAGTAGACCGAACCCTCCATTTTCAGCTCATCCAGAAGCAGAAGCAGAAGCAGGATGATGAAGCTGCCGCGCTGGTTGTCCAGTGCACTGTTCCCTATGCGACTGAACGTTCTTTTGTTAGCTCGCATTTCTCTTTTATGGCAATGCTATTCATTATCATCCATTCTTTTCTTTGCTCTCCACTCGACAGTCTTCTAGGAAACAGTAATTCTGCTGATACTGATTCTATTTTCTACTCGTTTGTTTGTTTGTCTTTGGGGTCTGTAACACAAAGTGATTGCAAGCATAATGGAGAAGAAGACTTTGGACGGCACATGAGAGGTAGAATAAATGGCATTCATAGAAATCCCTGGGAGAGCATATCAAAACAGTGGAGGTTGGTGCAGTATCTTCCCTCTTCTAAATTGGCAATGGTAAAAGAGTTCTTGTTTTGGGAAGATGTATGGCTTGGTCATGGCTTTTCTTTCGAAACTATGGATGGAAGAATATTGAGAATCCTCAAGGATAAAGCTTCTTCCGCCATGGGTTCTCTGTCAGATGGCGGAGGAAGACCTCGATCATATTCTCTATCTGATGGCAGAGGAAGACCTCGATCAGATGTTGGGGGTGGCCTGGCCATGGGTTCATTCAAAAGGTTAAGGCACTTAAAGGACTTTTGGAAGAATGGAACTATGCCACCTTTGGAAAAATACCATGGTGGAAATCCTTTTTGGAAATGGTGTGAGCTTGGTGTCATAGACGATGATATTGAGACTAAATTTATCGATTTCTTTAAAGGGCTTTACATGAAGAATCGAGTCTTGCTATCATCTTTCTTCTCCACCATTCACGCCTTCAAAGAAGCCTTGGGCCTCCACATTAATCATAAGATGTTTGAGTTTATAGGCATCAATTTACCATTGGAAATCGTTGCCCTTGCCTCTGATTTTGGCAGTGACTTATGTGGGTCTCCTTCTTCATGGAAAGCCGTATACCATTTCTTTTGGGATCTTATTATTGAGAAGGTTGAGAGACGGCTAAAAGCAATGGTGGCAATTTTTGGGAAGAATTCCAGGAGTAACATCCTTCAGCTTTTATGTGGCCCTAATACTCTCTTCAAAGTTCAAAGCCAAGATGATTTGAATCAATGCAGTCACAGCCTTCCTCTAGAAGATTTGTGTCAGCTTCTGGAGATGACGGCGGCGTCGGCGACAGGTGCGATGAGGGAGATCGGCAGTGACGGGCGGAAAAAGATCTGGATCACATTCTTTGGAGTTGTGACTATGCGTGTTTTGTGTGGGGACCCTTTCTTTGATGCTTTTGGGATGCAGGTGCTGAGTTACCTGGATTATAGGGAGTTGATCGAGGAGTTCCTCCTTCATCCGCCTTTTCGAACCAACTATTTGTTCAAATTATGTGTAAGAAAGCTGGTCATGTTGGATATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAAAATTTTACTCATACAGGGCCAGCGTAGATTATTTAAGGAAAATCGAAGAGCGTCGAGGTGCTCTGGGCACAGTGTCTCGACTCTGTGCCCTCCACACTTCGGCTGGGAATTGACCTGCAGCAGCATCGAGACGCCCAAAGGATGGTGTCTCGACGTTGTGATCTCGGGAATGTTGGCTGTTGCAGTCACAAAGAATGCAAGTGACAGAGTTTATGCTAGTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGGTGCCTTGTCTGCCAACTTTCACTAAATTGGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTACTGCTGACATTCTTTCCTGCCATAGGCGAACGCAAGTATGACTGGACAAAGAAACAGTTTTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCTAGAGACTCTTGTGAATTCTATCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTTATCTCTTTGAATGTTGTTAATAACACACAACAAACCAAAGAATTCTTGAGTGTACCCTTCACAGCAGGCGAATTTTCTGTAATGAAGACAGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCAAACCTAGTCCTGGCATGGGAAAGGTTCTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 2313 44.19 LFAGRDVLSSTIQTGFRHSLVRCLSEVDRTLHFQLIQKQKQKQDDEAAALVVQCTVPYATERSFVSSHFSFMAMLFIIIHSFLCSPLDSLLGNSNSADTDSIFYSFVCLSLGSVTQSDCKHNGEEDFGRHMRGRINGIHRNPWESISKQWRLVQYLPSSKLAMVKEFLFWEDVWLGHGFSFETMDGRILRILKDKASSAMGSLSDGGGRPRSYSLSDGRGRPRSDVGGGLAMGSFKRLRHLKDFWKNGTMPPLEKYHGGNPFWKWCELGVIDDDIETKFIDFFKGLYMKNRVLLSSFFSTIHAFKEALGLHINHKMFEFIGINLPLEIVALASDFGSDLCGSPSSWKAVYHFFWDLIIEKVERRLKAMVAIFGKNSRSNILQLLCGPNTLFKVQSQDDLNQCSHSLPLEDLCQLLEMTAASATGAMREIGSDGRKKIWITFFGVVTMRVLCGDPFFDAFGMQVLSYLDYRELIEEFLLHPPFRTNYLFKLCVRKLVMLDILLGRILSHLELAFQILDKILLIQGQRRLFKENRRASRCSGHSVSTLCPPHFGWELTCSSIETPKGWCLDVVISGMLAVAVTKNASDRVYASYNVYKGKAGLSMVPCLPTFTKLESGSLVIDRRGSVLLTFFPAIGERKYDWTKKQFFALSPTEVGTLISLGPRDSCEFYHDPGMLSSTAGQVRKSLSIKAHADGNGYFISLNVVNNTQQTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSPGMGKVLQPNKVDREALSLEWER 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10101042 10116752 - Maker00004572 Lcy9g0364 641480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0364 770 MobiDBLite consensus disorder prediction 199 225 - -
Lcy9g0364 770 Gene3D Transcriptional Coactivator Pc4; Chain A 579 748 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy9g0364 770 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 581 770 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy9g0364 770 Pfam Whirly transcription factor 594 728 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy9g0364 770 SUPERFAMILY ssDNA-binding transcriptional regulator domain 585 769 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0364 K26561 - - csv:101219085 319.701
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2306 Lcy-Chr13:41953445 Lcy9g0364 Lcy-Chr9:10101042 6.27E-37 dispersed
Lcy9g0364 Lcy-Chr9:10101042 Lcy4g0615 Lcy-Chr4:7352647 1.96E-09 dispersed
Lcy9g0364 Lcy-Chr9:10101042 Lcy9g0411 Lcy-Chr9:11494379 6.90E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g2306 . 67 309 Whirly Transcription Factor Family AT1G14410 64.2 2.4e-85 312.8
Lcy9g0364 . 585 744 Whirly Transcription Factor Family AT1G71260 66.9 6.1e-59 224.9
Lcy13g2306 . 59 309 Whirly Transcription Factor Family AT2G02740 63.1 1.6e-84 310.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20616 None None None None Lcy TF