Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0364 | CTCTTCGCTGGTCGGGACGTTCTGTCCTCGACGATTCAAACGGGTTTCCGTCATTCTCTCGTTCGCTGTCTGTCTGAAGTAGACCGAACCCTCCATTTTCAGCTCATCCAGAAGCAGAAGCAGAAGCAGGATGATGAAGCTGCCGCGCTGGTTGTCCAGTGCACTGTTCCCTATGCGACTGAACGTTCTTTTGTTAGCTCGCATTTCTCTTTTATGGCAATGCTATTCATTATCATCCATTCTTTTCTTTGCTCTCCACTCGACAGTCTTCTAGGAAACAGTAATTCTGCTGATACTGATTCTATTTTCTACTCGTTTGTTTGTTTGTCTTTGGGGTCTGTAACACAAAGTGATTGCAAGCATAATGGAGAAGAAGACTTTGGACGGCACATGAGAGGTAGAATAAATGGCATTCATAGAAATCCCTGGGAGAGCATATCAAAACAGTGGAGGTTGGTGCAGTATCTTCCCTCTTCTAAATTGGCAATGGTAAAAGAGTTCTTGTTTTGGGAAGATGTATGGCTTGGTCATGGCTTTTCTTTCGAAACTATGGATGGAAGAATATTGAGAATCCTCAAGGATAAAGCTTCTTCCGCCATGGGTTCTCTGTCAGATGGCGGAGGAAGACCTCGATCATATTCTCTATCTGATGGCAGAGGAAGACCTCGATCAGATGTTGGGGGTGGCCTGGCCATGGGTTCATTCAAAAGGTTAAGGCACTTAAAGGACTTTTGGAAGAATGGAACTATGCCACCTTTGGAAAAATACCATGGTGGAAATCCTTTTTGGAAATGGTGTGAGCTTGGTGTCATAGACGATGATATTGAGACTAAATTTATCGATTTCTTTAAAGGGCTTTACATGAAGAATCGAGTCTTGCTATCATCTTTCTTCTCCACCATTCACGCCTTCAAAGAAGCCTTGGGCCTCCACATTAATCATAAGATGTTTGAGTTTATAGGCATCAATTTACCATTGGAAATCGTTGCCCTTGCCTCTGATTTTGGCAGTGACTTATGTGGGTCTCCTTCTTCATGGAAAGCCGTATACCATTTCTTTTGGGATCTTATTATTGAGAAGGTTGAGAGACGGCTAAAAGCAATGGTGGCAATTTTTGGGAAGAATTCCAGGAGTAACATCCTTCAGCTTTTATGTGGCCCTAATACTCTCTTCAAAGTTCAAAGCCAAGATGATTTGAATCAATGCAGTCACAGCCTTCCTCTAGAAGATTTGTGTCAGCTTCTGGAGATGACGGCGGCGTCGGCGACAGGTGCGATGAGGGAGATCGGCAGTGACGGGCGGAAAAAGATCTGGATCACATTCTTTGGAGTTGTGACTATGCGTGTTTTGTGTGGGGACCCTTTCTTTGATGCTTTTGGGATGCAGGTGCTGAGTTACCTGGATTATAGGGAGTTGATCGAGGAGTTCCTCCTTCATCCGCCTTTTCGAACCAACTATTTGTTCAAATTATGTGTAAGAAAGCTGGTCATGTTGGATATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAAAATTTTACTCATACAGGGCCAGCGTAGATTATTTAAGGAAAATCGAAGAGCGTCGAGGTGCTCTGGGCACAGTGTCTCGACTCTGTGCCCTCCACACTTCGGCTGGGAATTGACCTGCAGCAGCATCGAGACGCCCAAAGGATGGTGTCTCGACGTTGTGATCTCGGGAATGTTGGCTGTTGCAGTCACAAAGAATGCAAGTGACAGAGTTTATGCTAGTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGGTGCCTTGTCTGCCAACTTTCACTAAATTGGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTACTGCTGACATTCTTTCCTGCCATAGGCGAACGCAAGTATGACTGGACAAAGAAACAGTTTTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCTAGAGACTCTTGTGAATTCTATCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTTATCTCTTTGAATGTTGTTAATAACACACAACAAACCAAAGAATTCTTGAGTGTACCCTTCACAGCAGGCGAATTTTCTGTAATGAAGACAGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCAAACCTAGTCCTGGCATGGGAAAGGTTCTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA | 2313 | 44.19 | LFAGRDVLSSTIQTGFRHSLVRCLSEVDRTLHFQLIQKQKQKQDDEAAALVVQCTVPYATERSFVSSHFSFMAMLFIIIHSFLCSPLDSLLGNSNSADTDSIFYSFVCLSLGSVTQSDCKHNGEEDFGRHMRGRINGIHRNPWESISKQWRLVQYLPSSKLAMVKEFLFWEDVWLGHGFSFETMDGRILRILKDKASSAMGSLSDGGGRPRSYSLSDGRGRPRSDVGGGLAMGSFKRLRHLKDFWKNGTMPPLEKYHGGNPFWKWCELGVIDDDIETKFIDFFKGLYMKNRVLLSSFFSTIHAFKEALGLHINHKMFEFIGINLPLEIVALASDFGSDLCGSPSSWKAVYHFFWDLIIEKVERRLKAMVAIFGKNSRSNILQLLCGPNTLFKVQSQDDLNQCSHSLPLEDLCQLLEMTAASATGAMREIGSDGRKKIWITFFGVVTMRVLCGDPFFDAFGMQVLSYLDYRELIEEFLLHPPFRTNYLFKLCVRKLVMLDILLGRILSHLELAFQILDKILLIQGQRRLFKENRRASRCSGHSVSTLCPPHFGWELTCSSIETPKGWCLDVVISGMLAVAVTKNASDRVYASYNVYKGKAGLSMVPCLPTFTKLESGSLVIDRRGSVLLTFFPAIGERKYDWTKKQFFALSPTEVGTLISLGPRDSCEFYHDPGMLSSTAGQVRKSLSIKAHADGNGYFISLNVVNNTQQTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSPGMGKVLQPNKVDREALSLEWER | 770 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10101042 | 10116752 | - | Maker00004572 | Lcy9g0364 | 641480 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0364 | 770 | MobiDBLite | consensus disorder prediction | 199 | 225 | - | - | |
Lcy9g0364 | 770 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 579 | 748 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy9g0364 | 770 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 581 | 770 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Lcy9g0364 | 770 | Pfam | Whirly transcription factor | 594 | 728 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Lcy9g0364 | 770 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 585 | 769 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2306 | Lcy-Chr13:41953445 | Lcy9g0364 | Lcy-Chr9:10101042 | 6.27E-37 | dispersed | |
Lcy9g0364 | Lcy-Chr9:10101042 | Lcy4g0615 | Lcy-Chr4:7352647 | 1.96E-09 | dispersed | |
Lcy9g0364 | Lcy-Chr9:10101042 | Lcy9g0411 | Lcy-Chr9:11494379 | 6.90E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20616 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g0364 | K26561 | - | csv:101219085 | 319.701 |